RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1174207", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1174207 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2315960 2315960 PRJNA1174207_P_NODE_32862_length_252_cov_4.346369_g32333_i0 PRJNA1174207 32862 252 4.346369 10.95284988 Myxococcota 2818505 Bacteria Bacteria 459 1.1499999999999996e-124   NTclustered gi|375245462|gb|JQ653869.1| 34034 g32333 i0 99.602 99.7936507936508 251 1 99 0 2 252 613 363 Uncultured delta proteobacterium clone 170 16S ribosomal RNA gene, partial sequence blastn 25148 460 0.997826086956522 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
3591013 3591013 PRJNA1174207_P_NODE_23323_length_294_cov_1.366516_g22794_i0 PRJNA1174207 23323 294 1.366516 4.01755704 Bacteria 2 Bacteria Bacteria 544 3.69e-150   NTclustered gi|219917285|emb|AM936907.1| 34034 g22794 i0 100 99.969387755102 294 0 100 0 1 294 865 572 Uncultured delta proteobacterium partial 16S rRNA gene, clone CM14G7 blastn 29391 544 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;