RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1174207", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1174207 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590239 1590239 PRJNA1174207_P_NODE_25002_length_285_cov_4.198113_g24473_i0 PRJNA1174207 25002 285 4.198113 11.96462205 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 149 6.82e-42   NR XP_029215426.1 94643 g24473 i0 74.5 6.85263157894737 94 24 98.9 0 2 283 87 180 XP_029215426.1 putative phosphate carrier [Besnoitia besnoiti] diamond 1953 150 0.993333333333333 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Besnoitia Besnoitia besnoiti
2866723 2866723 PRJNA1174207_P_NODE_41463_length_241_cov_0.916667_g40934_i0 PRJNA1174207 41463 241 0.916667 2.20916747 Cystoisospora suis 483139 SAR_Eukaryotes SAR_Eukaryotes 172 1.6e-38   NTclustered gi|2795614254|ref|XM_068061157.1| 483139 g40934 i0 84.181 59.3236514522822 177 28 73 0 3 179 981 805 Cystoisospora suis adp ribosylation factor (CSUI_000951), mRNA blastn 14297 172 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
29692770 29692770 PRJNA1174207_P_NODE_27970_length_273_cov_1.530000_g27441_i0 PRJNA1174207 27970 273 1.53 4.1769 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 62.4 6.31e-9   NR XP_028528138.1 5849 g27441 i0 41 0.857142857142857 78 42 85.7 2 39 272 315 388 XP_028528138.1 calcium dependent protein kinase 3, putative [Plasmodium gallinaceum] diamond 234 62.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
29711963 29711963 PRJNA1174207_P_NODE_41730_length_241_cov_0.916667_g41201_i0 PRJNA1174207 41730 241 0.916667 2.20916747 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0196   NR SOV83951.1 31272 g41201 i0 41.9 5.77593360995851 62 32 73.4 2 53 229 249 309 SOV83951.1 DnaJ protein,putative, putative [Plasmodium sp.] diamond 1392 43.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp.
29996725 29996725 PRJNA1174207_P_NODE_16451_length_354_cov_0.818505_g15922_i0 PRJNA1174207 16451 354 0.818505 2.8975077 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 88.6 1.11e-17   NR XP_067067795.1 117008 g15922 i0 76.9 4.23728813559322 52 12 44.1 0 354 199 451 502 XP_067067795.1 NLI interacting factor-like phosphatase family protein [Cryptosporidium andersoni] diamond 1500 88.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium andersoni
31482127 31482127 PRJNA1174207_P_NODE_35516_length_248_cov_1.760000_g34987_i0 PRJNA1174207 35516 248 1.76 4.3648 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 81.3 1.09e-15   NR XP_013337707.1 5804 g34987 i0 52.7 5.33467741935484 74 35 89.5 0 222 1 660 733 XP_013337707.1 dynamin-like protein, putative [Eimeria maxima] diamond 1323 82 0.991463414634146 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;