RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1174207", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1174207 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26913847 26913847 PRJNA1174207_P_NODE_42742_length_231_cov_2.481013_g42213_i0 PRJNA1174207 42742 231 2.481013 5.73114003 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 47.8 5.53e-4   NR MFA5337253.1 2035772 g42213 i0 37.5 0.831168831168831 64 40 83.1 0 225 34 333 396 MFA5337253.1 glycosyltransferase family 39 protein [Candidatus Omnitrophota bacterium] diamond 192 47.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31797893 31797893 PRJNA1174207_P_NODE_35937_length_248_cov_0.880000_g35408_i0 PRJNA1174207 35937 248 0.88 2.1824 Pseudomonadati 3379134 Bacteria Bacteria 110 3.9900000000000006e-27   NR KJJ83932.1 1609969 g35408 i0 57.1 2.87903225806452 77 33 93.1 0 244 14 56 132 KJJ83932.1 glycosyl transferase family protein [Candidatus Omnitrophus magneticus] diamond 714 110 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota       Candidatus Omnitrophus Candidatus Omnitrophus magneticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;