RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1174207", tax_clade = "Haptista" and tax_superkingdom = "Eukaryota"

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analysis 2

tax_superkingdom 1

  • Eukaryota · 6 ✖

tax_phylum 1

tax_clade 1

  • Haptista · 6 ✖

bioproject 1

  • PRJNA1174207 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2315803 2315803 PRJNA1174207_P_NODE_20522_length_312_cov_2.267782_g19993_i0 PRJNA1174207 20522 312 2.267782 7.07547984 Pterocystida 2607628 Root_unresolved Root_unresolved 270 7.399999999999998e-68   NTclustered gi|61187375|gb|AY752993.1| 299886 g19993 i0 94.798 65.1121794871795 173 9 55 0 9 181 3378 3206 Pterocystis tropica 28S ribosomal RNA gene, partial sequence blastn 20315 270 1 Eukaryota Haptista     Centroplasthelida Pterocystida Pterocystidae Pterocystis Pterocystis tropica
11793967 11793967 PRJNA1174207_P_NODE_12970_length_407_cov_4.907186_g12443_i0 PRJNA1174207 12970 407 4.907186 19.97224702 Raphidocystis contractilis 2792838 Root_unresolved Root_unresolved 329 1.61e-85   NTclustered gi|81230320|dbj|AB196984.1| 2792838 g12443 i0 96.04 50.6068796068796 202 8 50 0 147 348 1072 1273 Raphidocystis contractilis gene for 18S ribosomal RNA, partial sequence blastn 20597 329 1 Eukaryota Haptista     Centroplasthelida Acanthocystida Raphidocystidae Raphidocystis Raphidocystis contractilis
20716662 20716662 PRJNA1174207_P_NODE_10157_length_479_cov_4.958128_g9631_i0 PRJNA1174207 10157 479 4.958128 23.74943312 Raphidocystis contractilis 2792838 Root_unresolved Root_unresolved 316 1.5e-81   NTclustered gi|81230320|dbj|AB196984.1| 2792838 g9631 i0 79.261 33.8329853862213 487 75 100 20 1 479 1569 2037 Raphidocystis contractilis gene for 18S ribosomal RNA, partial sequence blastn 16206 316 1 Eukaryota Haptista     Centroplasthelida Acanthocystida Raphidocystidae Raphidocystis Raphidocystis contractilis
23267508 23267508 PRJNA1174207_P_NODE_10739_length_461_cov_3.345361_g10213_i0 PRJNA1174207 10739 461 3.345361 15.42211421 Raphidocystis contractilis 2792838 Root_unresolved Root_unresolved 368 3.91e-97   NTclustered gi|81230320|dbj|AB196984.1| 2792838 g10213 i0 81.837 58.3687635574837 479 49 99 24 1 459 13 473 Raphidocystis contractilis gene for 18S ribosomal RNA, partial sequence blastn 26908 368 1 Eukaryota Haptista     Centroplasthelida Acanthocystida Raphidocystidae Raphidocystis Raphidocystis contractilis
29851100 29851100 PRJNA1174207_P_NODE_33331_length_251_cov_1.297753_g32802_i0 PRJNA1174207 33331 251 1.297753 3.25736003 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 68.9 2.39e-11   NR KOO25806.1 1460289 g32802 i0 39 2.9402390438247 82 50 98 0 1 246 317 398 KOO25806.1 amine oxidase [Chrysochromulina tobinii] diamond 738 68.9 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii
31304403 31304403 PRJNA1174207_P_NODE_30575_length_262_cov_1.629630_g30046_i0 PRJNA1174207 30575 262 1.62963 4.2696306 Prymnesium parvum 97485 Haptophyta other_Eukaryota 139 2.14e-39   NR KAL1525517.1 97485 g30046 i0 81.9 7.2824427480916 83 15 95 0 12 260 38 120 KAL1525517.1 hypothetical protein AB1Y20_020373 [Prymnesium parvum] diamond 1908 139 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;