RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1174207", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1174207 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21992185 21992185 PRJNA1174207_P_NODE_25378_length_284_cov_1.459716_g24849_i0 PRJNA1174207 25378 284 1.459716 4.14559344 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 442 1.3299999999999995e-119   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g24849 i0 94.718 185.070422535211 284 15 100 0 1 284 3832517 3832234 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 52560 442 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
23267637 23267637 PRJNA1174207_P_NODE_18359_length_332_cov_0.992278_g17830_i0 PRJNA1174207 18359 332 0.992278 3.29436296 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 422 2.07e-113   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g17830 i0 90.549 361.698795180723 328 17 99 7 1 328 1308538 1308851 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 120084 422 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;