RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1174207", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 4 ✖

tax_clade 1

  • CRuMs · 4 ✖

bioproject 1

  • PRJNA1174207 · 4 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1590416 1590416 PRJNA1174207_P_NODE_34002_length_250_cov_1.672316_g33473_i0 PRJNA1174207 34002 250 1.672316 4.18079 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 219 2.11e-52   NTclustered gi|300078503|gb|GU001165.1| 238746 g33473 i0 83.128 34.872 243 38 97 3 1 243 1320 1559 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8718 219 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
2866620 2866620 PRJNA1174207_P_NODE_35583_length_248_cov_1.577143_g35054_i0 PRJNA1174207 35583 248 1.577143 3.91131464 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 459 1.13e-124   NTclustered gi|300078503|gb|GU001165.1| 238746 g35054 i0 100 39.375 248 0 100 0 1 248 3232 2985 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9765 459 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
20716987 20716987 PRJNA1174207_P_NODE_27877_length_273_cov_2.280000_g27348_i0 PRJNA1174207 27877 273 2.28 6.2244 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 357 4.7399999999999997e-94   NTclustered gi|300078503|gb|GU001165.1| 238746 g27348 i0 90.441 45.0879120879121 272 25 99 1 2 273 4409 4139 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 12309 357 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
23267701 23267701 PRJNA1174207_P_NODE_21499_length_308_cov_1.293617_g20970_i0 PRJNA1174207 21499 308 1.293617 3.98434036 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 416 8.849999999999998e-112   NTclustered gi|33089877|gb|AY283747.1| 238746 g20970 i0 99.134 97.3701298701299 231 2 75 0 78 308 3 233 Micronuclearia podoventralis isolate MiAc54_1 actin gene, partial cds blastn 29990 416 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;