RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1174207" and tax_clade = "Apusozoa"

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tax_superkingdom 1

tax_clade 1

  • Apusozoa · 6 ✖

bioproject 1

  • PRJNA1174207 · 6 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2866667 2866667 PRJNA1174207_P_NODE_38243_length_245_cov_0.895349_g37714_i0 PRJNA1174207 38243 245 0.895349 2.19360505 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 92 1.42e-19   NR XP_013759386.1 461836 g37714 i0 51.3 0.979591836734694 80 38 96.7 1 1 237 304 383 XP_013759386.1 peptidase M28 [Thecamonas trahens ATCC 50062] diamond 240 92 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28051223 28051223 PRJNA1174207_P_NODE_27785_length_274_cov_1.208955_g27256_i0 PRJNA1174207 27785 274 1.208955 3.3125367 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 60.5 2.99e-8   NR XP_013755835.1 461836 g27256 i0 55 0.656934306569343 60 16 64.6 3 94 270 21 70 XP_013755835.1 uncharacterized protein AMSG_07772 [Thecamonas trahens ATCC 50062] diamond 180 60.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30230076 30230076 PRJNA1174207_P_NODE_16432_length_354_cov_1.295374_g15903_i0 PRJNA1174207 16432 354 1.295374 4.58562396 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 91.3 1.03e-20   NR XP_013759878.1 461836 g15903 i0 44.8 0.889830508474576 105 58 89 0 315 1 6 110 XP_013759878.1 calponin [Thecamonas trahens ATCC 50062] diamond 315 91.3 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
30672312 30672312 PRJNA1174207_P_NODE_40873_length_242_cov_0.911243_g40344_i0 PRJNA1174207 40873 242 0.911243 2.20520806 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 59.7 6.04e-9   NR XP_013758370.1 461836 g40344 i0 39 0.954545454545455 77 47 95.5 0 231 1 65 141 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 231 59.7 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
31335961 31335961 PRJNA1174207_P_NODE_11356_length_445_cov_2.059140_g10830_i0 PRJNA1174207 11356 445 2.05914 9.163173 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 117 2.68e-30   NR XP_013758370.1 461836 g10830 i0 45.1 0.896629213483146 133 70 89.7 1 8 406 12 141 XP_013758370.1 uncharacterized protein AMSG_04698 [Thecamonas trahens ATCC 50062] diamond 399 117 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32664164 32664164 PRJNA1174207_P_NODE_34220_length_250_cov_0.870056_g33691_i0 PRJNA1174207 34220 250 0.870056 2.17514 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 72.8 1.07e-12   NR XP_013754033.1 461836 g33691 i0 47.8 0.804 67 33 78 1 55 249 366 432 XP_013754033.1 X-Pro dipeptidyl-peptidase domain-containing protein [Thecamonas trahens ATCC 50062] diamond 201 72.8 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;