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contig_metadata

8 rows where bioproject = "PRJNA1174207", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 8 ✖

tax_clade 1

  • Amoebozoa · 8 ✖

bioproject 1

  • PRJNA1174207 · 8 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
315959 315959 PRJNA1174207_P_NODE_41021_length_241_cov_3.386905_g40492_i0 PRJNA1174207 41021 241 3.386905 8.16244105 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 412 8.64e-111   NTclustered gi|909719645|gb|KT185625.1| 5778 g40492 i0 97.51 1.94605809128631 241 6 100 0 1 241 6817 7057 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 469 412 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6693241 6693241 PRJNA1174207_P_NODE_13426_length_398_cov_3.664615_g12898_i0 PRJNA1174207 13426 398 3.664615 14.5851677 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 695 0   NTclustered gi|54306228|gb|AY626163.1| 297386 g12898 i0 98.241 76.3894472361809 398 6 100 1 1 398 594 990 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 30403 695 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
15618687 15618687 PRJNA1174207_P_NODE_43673_length_206_cov_7.902256_g43144_i0 PRJNA1174207 43673 206 7.902256 16.27864736 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 374 3.3799999999999997e-99   NTclustered gi|54306228|gb|AY626163.1| 297386 g43144 i0 99.512 58.995145631068 205 1 99 0 1 205 1279 1483 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 12153 374 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
16892722 16892722 PRJNA1174207_P_NODE_28574_length_270_cov_2.182741_g28045_i0 PRJNA1174207 28574 270 2.182741 5.8934007 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 399 7.669999999999998e-107   NTclustered gi|259595677|gb|FJ705341.1| 675832 g28045 i0 93.358 44.9925925925926 271 17 100 1 1 270 1231 961 Spumochlamys bryora clone 1901 18S ribosomal RNA gene, partial sequence blastn 12148 399 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
16893015 16893015 PRJNA1174207_P_NODE_43434_length_219_cov_6.568493_g42905_i0 PRJNA1174207 43434 219 6.568493 14.38499967 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 383 6.05e-102   NTclustered gi|54306228|gb|AY626163.1| 297386 g42905 i0 98.165 50.662100456621 218 4 99 0 1 218 126 343 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 11095 383 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
16893041 16893041 PRJNA1174207_P_NODE_5494_length_721_cov_1.848765_g4990_i0 PRJNA1174207 5494 721 1.848765 13.32959565 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 907 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g4990 i0 89.365 35.8959778085992 724 74 100 1 1 721 2298 3021 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 25881 907 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
20166828 20166828 PRJNA1174207_P_NODE_19796_length_318_cov_3.134694_g19267_i0 PRJNA1174207 19796 318 3.134694 9.96832692 Cryptodifflugia 1078833 Tubulinea other_Eukaryota 553 6.699999999999998e-153   NTclustered gi|345294024|gb|JF694280.1| 1078836 g19267 i0 98.107 85.6761006289308 317 6 99 0 2 318 1803 1487 Cryptodifflugia operculata small subunit ribosomal RNA gene, partial sequence blastn 27245 553 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
23992832 23992832 PRJNA1174207_P_NODE_29239_length_267_cov_5.896907_g28710_i0 PRJNA1174207 29239 267 5.896907 15.74474169 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 483 7.31e-132   NTclustered gi|909719645|gb|KT185625.1| 5778 g28710 i0 99.251 39.1198501872659 267 2 100 0 1 267 3608 3874 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 10445 483 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;