RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1169999" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1169999 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26850818 26850818 PRJNA1169999_P_NODE_2421_length_259_cov_1.655914_g2385_i0 PRJNA1169999 2421 259 1.655914 4.28881726 Polyangiaceae bacterium 2268199 Bacteria Bacteria 58.2 1.49e-7   NR HWL86523.1 2268199 g2385 i0 45.1 0.822393822393822 71 39 82.2 0 257 45 246 316 HWL86523.1 hypothetical protein [Polyangiaceae bacterium] diamond 213 58.2 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30040528 30040528 PRJNA1169999_P_NODE_3651_length_245_cov_0.895349_g3615_i0 PRJNA1169999 3651 245 0.895349 2.19360505 Archangium sp. 1872627 Bacteria Bacteria 43.1 0.0274   NR MBL9038603.1 1872627 g3615 i0 40 0.673469387755102 55 32 67.3 1 40 204 206 259 MBL9038603.1 hypothetical protein [Archangium sp.] diamond 165 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
30577404 30577404 PRJNA1169999_P_NODE_1153_length_341_cov_0.813433_g1117_i0 PRJNA1169999 1153 341 0.813433 2.77380653 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.8 0.00939   NR TVQ95849.1 2026735 g1117 i0 39.3 0.73900293255132 84 34 58.9 5 204 4 157 240 TVQ95849.1 MAG: hypothetical protein EA398_16795 [Deltaproteobacteria bacterium] diamond 252 45.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32032051 32032051 PRJNA1169999_P_NODE_738_length_423_cov_1.271429_g702_i0 PRJNA1169999 738 423 1.271429 5.37814467 Anaeromyxobacter sp. 1872521 Bacteria Bacteria 45.1 0.033   NR HET7823967.1 1872521 g702 i0 28.9 0.638297872340426 90 62 63.8 2 63 332 104 191 HET7823967.1 murein biosynthesis integral membrane protein MurJ [Anaeromyxobacter sp.] diamond 270 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;