RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1169999" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1169999 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6693107 6693107 PRJNA1169999_P_NODE_1226_length_331_cov_1.124031_g1190_i0 PRJNA1169999 1226 331 1.124031 3.72054261 Bacillus sp. Y1 352858 Bacteria Bacteria 606 5.299999999999998e-169   NTclustered gi|1480120062|gb|CP030028.1| 352858 g1190 i0 99.698 796.891238670695 331 1 100 0 1 331 12481 12811 Bacillus sp. Y1 chromosome, complete genome blastn 263771 606 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. Y1
10518851 10518851 PRJNA1169999_P_NODE_1549_length_294_cov_2.162896_g1513_i0 PRJNA1169999 1549 294 2.162896 6.35891424 Bacillus sp. SI2 3077323 Bacteria Bacteria 538 1.7199999999999995e-148   NTclustered gi|2589076988|gb|CP135601.1| 3077323 g1513 i0 99.66 100 294 1 100 0 1 294 4912916 4913209 Bacillus sp. SI2 chromosome, complete genome blastn 29400 538 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Bacillaceae Bacillus Bacillus sp. SI2
15067933 15067933 PRJNA1169999_P_NODE_912_length_381_cov_0.974026_g876_i0 PRJNA1169999 912 381 0.974026 3.71103906 Streptococcus 1301 Bacteria Bacteria 662 0   NTclustered gi|2069312734|gb|CP078546.1| 1334 g876 i0 98.153 484.737532808399 379 7 99 0 1 379 22716 23094 Streptococcus dysgalactiae strain Colony618 chromosome blastn 184685 662 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus dysgalactiae
23992453 23992453 PRJNA1169999_P_NODE_3219_length_248_cov_0.880000_g3183_i0 PRJNA1169999 3219 248 0.88 2.1824 Streptococcus 1301 Bacteria Bacteria 459 1.13e-124   NTclustered gi|1686100227|gb|MK330575.1| 28037 g3183 i0 100 336.108870967742 248 0 100 0 1 248 3937 4184 Streptococcus mitis strain PL429 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 83355 459 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;