RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1169999" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1169999 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2866050 2866050 PRJNA1169999_P_NODE_1403_length_308_cov_1.493617_g1367_i0 PRJNA1169999 1403 308 1.493617 4.60034036 Trichoderma atroviride 63577 Fungi Fungi 86.1 2.83e-12   NTclustered gi|2749703766|ref|XM_014090103.2| 63577 g1367 i0 88 1.43181818181818 75 6 24 1 26 100 2269 2198 Trichoderma atroviride uncharacterized protein (TrAtP1_012533), partial mRNA blastn 441 86.1 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Hypocreaceae Trichoderma Trichoderma atroviride
4868317 4868317 PRJNA1169999_P_NODE_3484_length_246_cov_0.890173_g3448_i0 PRJNA1169999 3484 246 0.890173 2.18982558 Trichoderma 5543 Fungi Fungi 189 1.62e-43   NTclustered gi|2670750865|ref|XM_062899072.1| 173218 g3448 i0 99.048 1.70731707317073 105 1 43 0 1 105 105 1 Trichoderma aggressivum f. europaeum uncharacterized protein (Triagg1_4646), partial mRNA blastn 420 189 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Hypocreaceae Trichoderma Trichoderma aggressivum
6143107 6143107 PRJNA1169999_P_NODE_1445_length_304_cov_1.930736_g1409_i0 PRJNA1169999 1445 304 1.930736 5.86943744 Lithohypha 2695291 Fungi Fungi 512 1.08e-140   NTclustered gi|2317219310|emb|OX346377.1| 1690604 g1409 i0 99.643 98.4473684210526 280 1 92 0 1 280 280 1 Lithohypha guttulata genomic DNA sequence contains 28S rRNA gene, strain FMR_20100 blastn 29928 514 0.996108949416342 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Chaetothyriales Trichomeriaceae Lithohypha Lithohypha guttulata
12518948 12518948 PRJNA1169999_P_NODE_3650_length_245_cov_0.895349_g3614_i0 PRJNA1169999 3650 245 0.895349 2.19360505 Ascomycota 4890 Fungi Fungi 368 1.93e-97   NTclustered gi|1002923432|gb|KU561803.1| 29908 g3614 i0 94.215 104.187755102041 242 13 98 1 2 242 243 2 Sporothrix schenckii strain B3759 28S ribosomal RNA gene, partial sequence blastn 25526 368 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Ophiostomatales Ophiostomataceae Sporothrix Sporothrix schenckii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;