RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1168532" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1168532 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7418089 7418089 PRJNA1168532_S_NODE_196106_length_222_cov_1.100559_g193163_i0 PRJNA1168532 196106 222 1.100559 2.44324098 Pestivirus 11095 Viruses Viruses 372 1.33e-98   NTclustered gi|2731951075|gb|PP770551.1| 11099 g193163 i0 96.847 100 222 7 100 0 1 222 10616 10395 Bovine viral diarrhea virus 1 isolate YN2-11/2023, complete genome blastn 22200 372 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
11793796 11793796 PRJNA1168532_S_NODE_302370_length_168_cov_1.128000_g299427_i0 PRJNA1168532 302370 168 1.128 1.89504 Pestivirus bovis 3052619 Viruses Viruses 272 9.95e-69   NTclustered gi|1129879569|gb|KX170152.1| 11099 g299427 i0 95.833 99.8214285714286 168 7 100 0 1 168 639 806 Bovine viral diarrhea virus 1 isolate V029 E2 gene, partial cds blastn 16770 272 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis
20166588 20166588 PRJNA1168532_S_NODE_138276_length_272_cov_1.764192_g135333_i0 PRJNA1168532 138276 272 1.764192 4.79860224 Pestivirus 11095 Viruses Viruses 464 2.7099999999999998e-126   NTclustered gi|2419860346|dbj|LC727644.1| 11099 g135333 i0 97.426 100.893382352941 272 7 100 0 1 272 622 893 Bovine viral diarrhea virus 1 Tokachi-8 RNA, nearly complete genome blastn 27443 464 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;