RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1168532" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1168532 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16342758 16342758 PRJNA1168532_S_NODE_286953_length_173_cov_3.407692_g284010_i0 PRJNA1168532 286953 173 3.407692 5.89530716 root 1 Root_unresolved Root_unresolved 320 3.61e-83   NTclustered gi|2612872|gb|AF010303.1| 63354 g284010 i0 100 100 173 0 100 0 1 173 671 843 Sclerotium sp. BSC-97 18S ribosomal RNA gene, partial sequence blastn 17300 320 1 Eukaryota Opisthokonta Fungi Ascomycota Leotiomycetes Helotiales Sclerotiniaceae   Sclerotiniaceae sp. BSC-97
21442189 21442189 PRJNA1168532_S_NODE_82857_length_348_cov_4.918033_g79914_i0 PRJNA1168532 82857 348 4.918033 17.11475484 root 1 Root_unresolved Root_unresolved 643 4.279999999999998e-180   NTclustered gi|1389182097|gb|CP029160.1| 4932 g79914 i0 100 100 348 0 100 0 1 348 5234788 5234441 Saccharomyces cerevisiae strain SY14 chromosome I, complete sequence blastn 34800 643 1 Eukaryota Opisthokonta Fungi Ascomycota Saccharomycetes Saccharomycetales Saccharomycetaceae Saccharomyces Saccharomyces cerevisiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;