RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1168532" and tax_kingdom = "Shotokuvirae"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA1168532 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2866046 2866046 PRJNA1168532_S_NODE_55343_length_409_cov_2.000000_g52471_i0 PRJNA1168532 55343 409 2 8.18 Betapolyomavirus macacae 1891767 Viruses Viruses 315 4.54e-81   NTclustered gi|15705935|gb|AF416237.1|AF416237 1891767 g52471 i0 86.411 1.5281173594132 287 39 70 0 45 331 296 10 Simian virus 40 clone G14M12 non-archetypal regulatory sequence blastn 625 315 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae
28998807 28998807 PRJNA1168532_S_NODE_158028_length_252_cov_2.148325_g155085_i0 PRJNA1168532 158028 252 2.148325 5.413779 Betapolyomavirus macacae 1891767 Viruses Viruses 70.1 9.39e-12   NR AAK29054.1 1891767 g155085 i0 82.5 0.476190476190476 40 7 47.6 0 119 238 498 537 AAK29054.1 truncated large tumor antigen [Betapolyomavirus macacae] diamond 120 70.1 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;