RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1167252" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1167252 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9242402 9242402 PRJNA1167252_P_NODE_20768_length_266_cov_1.419689_g20495_i0 PRJNA1167252 20768 266 1.419689 3.77637274 Naegleria pringsheimi 234921 Heterolobosea other_Eukaryota 370 5.91e-98   NTclustered gi|2515557648|gb|OR045415.1| 234921 g20495 i0 92.135 34.0225563909774 267 13 100 7 1 266 5661 5920 Naegleria pringsheimi strain Singh(s) rDNA-containing extrachromosomal element genomic sequence; 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence; and non-ribosomal sequence blastn 9050 370 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria pringsheimi
11793183 11793183 PRJNA1167252_P_NODE_24170_length_251_cov_0.876404_g23897_i0 PRJNA1167252 24170 251 0.876404 2.19977404 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 311 3.4e-80   NTclustered gi|290993491|ref|XM_002679321.1| 5762 g23897 i0 90.598 41.1394422310757 234 22 93 0 18 251 267 34 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_38530), partial mRNA blastn 10326 311 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
28651196 28651196 PRJNA1167252_P_NODE_28687_length_243_cov_0.917647_g28414_i0 PRJNA1167252 28687 243 0.917647 2.22988221 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 65.9 2.65e-10   NR XP_002677114.1 5762 g28414 i0 69 0.518518518518518 42 9 51.9 1 117 242 249 286 XP_002677114.1 uncharacterized protein NAEGRDRAFT_79768 [Naegleria gruberi] diamond 126 65.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
29566688 29566688 PRJNA1167252_P_NODE_25770_length_248_cov_0.891429_g25497_i0 PRJNA1167252 25770 248 0.891429 2.21074392 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 143 4.9e-40   NR XP_002676073.1 5762 g25497 i0 92.1 0.919354838709677 76 6 91.9 0 229 2 10 85 XP_002676073.1 abc transporter [Naegleria gruberi] diamond 228 143 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;