RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1167252", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 6 ✖

tax_kingdom 1

  • Methanobacteriati · 6 ✖

bioproject 1

  • PRJNA1167252 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
314685 314685 PRJNA1167252_P_NODE_27961_length_244_cov_0.912281_g27688_i0 PRJNA1167252 27961 244 0.912281 2.22596564 Archaea 2157 Archaea Archaea 174 1.4499999999999998e-48   NR OPX59280.1 1811728 g27688 i0 97.5 1.99180327868852 81 2 99.6 0 1 243 581 661 OPX59280.1 MAG: Reverse gyrase [Methanomassiliicoccales archaeon PtaB.Bin215] diamond 486 174 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon PtaB.Bin215
27008681 27008681 PRJNA1167252_P_NODE_24142_length_251_cov_0.876404_g23869_i0 PRJNA1167252 24142 251 0.876404 2.19977404 Thermoplasmatota archaeon 2806419 Archaea Archaea 105 4.72e-24   NR HLE96433.1 2806419 g23869 i0 60.2 0.99203187250996006 83 33 99.2 0 249 1 415 497 HLE96433.1 RNB domain-containing ribonuclease [Thermoplasmatota archaeon] diamond 249 105 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
28386175 28386175 PRJNA1167252_P_NODE_28026_length_244_cov_0.912281_g27753_i0 PRJNA1167252 28026 244 0.912281 2.22596564 Archaea 2157 Archaea Archaea 105 7.980000000000001e-27   NR OPX59092.1 1811728 g27753 i0 91.2 2.25 57 5 70.1 0 74 244 1 57 OPX59092.1 MAG: Methylated protein [Methanomassiliicoccales archaeon PtaB.Bin215] diamond 549 106 0.990566037735849 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon PtaB.Bin215
29188118 29188118 PRJNA1167252_P_NODE_25269_length_249_cov_0.886364_g24996_i0 PRJNA1167252 25269 249 0.886364 2.20704636 Methanomassiliicoccales archaeon 1906667 Archaea Archaea 170 2.88e-49   NR MBP7087473.1 1906667 g24996 i0 100 1 83 0 100 0 249 1 309 391 MBP7087473.1 MFS transporter [Methanomassiliicoccales archaeon] diamond 249 170 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales     Methanomassiliicoccales archaeon
30103539 30103539 PRJNA1167252_P_NODE_24032_length_251_cov_0.876404_g23759_i0 PRJNA1167252 24032 251 0.876404 2.19977404 Thermoplasmatales archaeon 2268204 Archaea Archaea 47.8 2.91e-4   NR MEM3861754.1 2268204 g23759 i0 50 0.525896414342629 44 22 52.6 0 114 245 2 45 MEM3861754.1 hypothetical protein [Thermoplasmatales archaeon] diamond 132 47.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon
32209492 32209492 PRJNA1167252_P_NODE_25158_length_249_cov_0.886364_g24885_i0 PRJNA1167252 25158 249 0.886364 2.20704636 Methanomassiliicoccus 1080709 Archaea Archaea 115 2.5e-28   NR WP_019176571.1 1080712 g24885 i0 70 5 70 21 84.3 0 31 240 1 70 WP_019176571.1 glycosyltransferase [Methanomassiliicoccus luminyensis] diamond 1245 115 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomassiliicoccaceae Methanomassiliicoccus Methanomassiliicoccus luminyensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;