RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1167252" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA1167252 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28575583 28575583 PRJNA1167252_P_NODE_25667_length_248_cov_0.891429_g25394_i0 PRJNA1167252 25667 248 0.891429 2.21074392 Pseudomonadati 3379134 Bacteria Bacteria 152 3.89e-46   NR OYV76706.1 1970506 g25394 i0 96.3 5.80645161290323 80 3 96.8 0 247 8 24 103 OYV76706.1 MAG: D-alanine--D-alanine ligase, partial [Deltaproteobacteria bacterium 21-66-5] diamond 1440 153 0.993464052287582 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium 21-66-5
30103540 30103540 PRJNA1167252_P_NODE_24232_length_251_cov_0.870787_g23959_i0 PRJNA1167252 24232 251 0.870787 2.18567537 Deltaproteobacteria bacterium GWA2_55_82 1797810 Bacteria Bacteria 102 5.04e-23   NR OGP17651.1 1797810 g23959 i0 56.6 1.9840637450199201 83 36 99.2 0 249 1 403 485 OGP17651.1 MAG: hypothetical protein A2Z79_05105 [Deltaproteobacteria bacterium GWA2_55_82] diamond 498 102 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWA2_55_82
31766433 31766433 PRJNA1167252_P_NODE_25297_length_249_cov_0.886364_g25024_i0 PRJNA1167252 25297 249 0.886364 2.20704636 Bacillota 1239 Bacteria Bacteria 129 9.419999999999999e-35   NR PKN70914.1 2013739 g25024 i0 75.6 6.91566265060241 82 20 98.8 0 2 247 138 219 PKN70914.1 MAG: imidazole glycerol phosphate synthase subunit HisF [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-12] diamond 1722 130 0.992307692307692 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;