RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1167252" and tax_clade = "Sar"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA1167252 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7417766 7417766 PRJNA1167252_P_NODE_22066_length_256_cov_3.076503_g21793_i0 PRJNA1167252 22066 256 3.076503 7.87584768 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 189 1.6999999999999996e-43   NTclustered gi|2795037587|ref|XM_067935188.1| 4785 g21793 i0 82.569 12.5859375 218 34 84 4 10 225 216 1 Phytophthora cinnamomi 60S ribosomal protein L5 (IUM83_10672), partial mRNA blastn 3222 189 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
10518031 10518031 PRJNA1167252_P_NODE_17549_length_291_cov_1.123853_g17276_i0 PRJNA1167252 17549 291 1.123853 3.27041223 Aureococcus anophagefferens 44056 SAR_Eukaryotes SAR_Eukaryotes 178 4.26e-40   NTclustered gi|676393912|ref|XM_009041986.1| 44056 g17276 i0 78.351 24.5704467353952 291 51 98 10 7 291 1203 1487 Aureococcus anophagefferens hypothetical protein partial mRNA blastn 7150 178 1 Eukaryota Sar     Pelagophyceae Pelagomonadales Pelagomonadaceae Aureococcus Aureococcus anophagefferens
29756079 29756079 PRJNA1167252_P_NODE_23691_length_251_cov_1.752809_g23418_i0 PRJNA1167252 23691 251 1.752809 4.39955059 Vitrella brassicaformis CCMP3155 1169540 SAR_Eukaryotes SAR_Eukaryotes 60.8 1.7e-8   NR CEL99444.1 1169540 g23418 i0 35.8 3.90836653386454 81 52 96.8 0 8 250 509 589 CEL99444.1 unnamed protein product [Vitrella brassicaformis CCMP3155] diamond 981 60.8 1 Eukaryota Sar         Vitrellaceae Vitrella Vitrella brassicaformis
31525968 31525968 PRJNA1167252_P_NODE_29456_length_242_cov_0.923077_g29183_i0 PRJNA1167252 29456 242 0.923077 2.23384634 Paramecium octaurelia 43137 SAR_Eukaryotes SAR_Eukaryotes 78.6 9.04e-15   NR CAD8206584.1 43137 g29183 i0 46.3 1.98347107438017 80 42 97.9 1 237 1 32 111 CAD8206584.1 unnamed protein product [Paramecium octaurelia] diamond 480 78.6 1 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium octaurelia

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;