RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1167252", tax_clade = "Opisthokonta" and tax_phylum = "Basidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 6 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 6 ✖

bioproject 1

  • PRJNA1167252 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
314673 314673 PRJNA1167252_P_NODE_27441_length_245_cov_0.906977_g27168_i0 PRJNA1167252 27441 245 0.906977 2.22209365 Rhodotorula glutinis 5535 Fungi Fungi 446 8.68e-121   NTclustered gi|225134685|gb|FJ345357.1| 5535 g27168 i0 99.592 74.4734693877551 245 0 100 1 1 245 3697 3940 Rhodotorula glutinis strain ATCC 16726 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18246 446 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Sporidiobolales Sporidiobolaceae Rhodotorula Rhodotorula glutinis
9242540 9242540 PRJNA1167252_P_NODE_25868_length_248_cov_0.891429_g25595_i0 PRJNA1167252 25868 248 0.891429 2.21074392 Cryptococcus 5206 Fungi Fungi 112 1.5500000000000002e-26   NR UOH80262.1 5207 g25595 i0 76.3 7.74193548387097 80 19 96.8 0 1 240 528 607 UOH80262.1 heat shock protein HSS1 [Cryptococcus neoformans] diamond 1920 112 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus neoformans
16891627 16891627 PRJNA1167252_P_NODE_23394_length_252_cov_0.871508_g23121_i0 PRJNA1167252 23394 252 0.871508 2.19620016 Tilletiopsis washingtonensis 58919 Fungi Fungi 460 3.2e-125   NTclustered gi|1423587223|ref|XM_025741220.1| 58919 g23121 i0 99.603 1 252 1 100 0 1 252 951 700 Tilletiopsis washingtonensis hypothetical protein (FA09DRAFT_326534), partial mRNA blastn 252 460 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Entylomatales   Tilletiopsis Tilletiopsis washingtonensis
20715940 20715940 PRJNA1167252_P_NODE_25357_length_249_cov_0.886364_g25084_i0 PRJNA1167252 25357 249 0.886364 2.20704636 Vanrija albida 181172 Fungi Fungi 54.7 0.006   NTclustered gi|2837729344|ref|XM_069353730.1| 181172 g25084 i0 96.875 0.1285140562249 32 1 13 0 108 139 829 798 Vanrija albida hsp90 co-chaperone Cdc37 (CDC37), partial mRNA blastn 32 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Trichosporonales Trichosporonaceae Vanrija Vanrija albida
29301909 29301909 PRJNA1167252_P_NODE_27569_length_245_cov_0.906977_g27296_i0 PRJNA1167252 27569 245 0.906977 2.22209365 Polyporaceae 5317 Fungi Fungi 59.3 5.63e-8   NR KAJ8482945.1 1111947 g27296 i0 49.2 3.86938775510204 63 29 77.1 1 189 1 823 882 KAJ8482945.1 hypothetical protein ONZ51_g5016 [Trametes cubensis] diamond 948 59.3 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Polyporales Polyporaceae Trametes Trametes cubensis
30672289 30672289 PRJNA1167252_P_NODE_24553_length_250_cov_0.881356_g24280_i0 PRJNA1167252 24553 250 0.881356 2.20339 Pseudomicrostroma glucosiphilum 1684307 Fungi Fungi 127 5.299999999999999e-32   NR XP_025344963.1 1684307 g24280 i0 74.1 0.972 81 21 97.2 0 3 245 573 653 XP_025344963.1 putative transketolase [Pseudomicrostroma glucosiphilum] diamond 243 127 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Microstromatales   Pseudomicrostroma Pseudomicrostroma glucosiphilum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;