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contig_metadata

24 rows where bioproject = "PRJNA1167252", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 24 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 24 ✖

bioproject 1

  • PRJNA1167252 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4141423 4141423 PRJNA1167252_P_NODE_24124_length_251_cov_0.876404_g23851_i0 PRJNA1167252 24124 251 0.876404 2.19977404 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 158 5.54e-45   NR HEY7612640.1 2448054 g23851 i0 91.6 0.99203187250996006 83 7 99.2 0 1 249 39 121 HEY7612640.1 anhydro-N-acetylmuramic acid kinase [Gemmatimonadales bacterium] diamond 249 158 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
10518204 10518204 PRJNA1167252_P_NODE_23209_length_252_cov_0.871508_g22936_i0 PRJNA1167252 23209 252 0.871508 2.19620016 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 161 1.93e-44   NR HEY5414301.1 2026741 g22936 i0 96.4 0.988095238095238 83 3 98.8 0 2 250 156 238 HEY5414301.1 protein kinase [Gemmatimonadaceae bacterium] diamond 249 161 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
10518371 10518371 PRJNA1167252_P_NODE_29569_length_242_cov_0.923077_g29296_i0 PRJNA1167252 29569 242 0.923077 2.23384634 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 157 3.0199999999999996e-47   NR HTE45631.1 2026741 g29296 i0 90 0.991735537190083 80 8 99.2 0 3 242 24 103 HTE45631.1 tRNA (cytidine(34)-2'-O)-methyltransferase [Gemmatimonadaceae bacterium] diamond 240 157 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
18166256 18166256 PRJNA1167252_P_NODE_27175_length_246_cov_0.901734_g26902_i0 PRJNA1167252 27175 246 0.901734 2.21826564 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 137 1.99e-35   NR HEX9703951.1 2448054 g26902 i0 86.4 0.98780487804878 81 11 98.8 0 244 2 755 835 HEX9703951.1 transcription-repair coupling factor [Gemmatimonadales bacterium] diamond 243 137 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
24540585 24540585 PRJNA1167252_P_NODE_28140_length_244_cov_0.912281_g27867_i0 PRJNA1167252 28140 244 0.912281 2.22596564 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 189 1.6099999999999996e-43   NTclustered gi|2874253755|emb|OY969695.1| 412054 g27867 i0 80.738 50.9303278688525 244 45 99 2 2 244 4429032 4429274 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 12427 189 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
24540603 24540603 PRJNA1167252_P_NODE_28800_length_243_cov_0.917647_g28527_i0 PRJNA1167252 28800 243 0.917647 2.22988221 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 278 3.3200000000000004e-70   NTclustered gi|575456455|gb|CP007128.1| 861299 g28527 i0 87.5 61.2757201646091 240 30 99 0 4 243 165134 164895 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 14890 278 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
25266262 25266262 PRJNA1167252_P_NODE_24180_length_251_cov_0.876404_g23907_i0 PRJNA1167252 24180 251 0.876404 2.19977404 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 147 2.21e-40   NR MBW3628217.1 2026742 g23907 i0 81.9 0.99203187250996006 83 15 99.2 0 2 250 147 229 MBW3628217.1 acyltransferase [Gemmatimonadota bacterium] diamond 249 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
26977152 26977152 PRJNA1167252_P_NODE_22642_length_253_cov_0.866667_g22369_i0 PRJNA1167252 22642 253 0.866667 2.19266751 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 135 2.04e-35   NR MEO7455817.1 2026741 g22369 i0 77.4 0.99604743083004 84 19 99.6 0 253 2 92 175 MEO7455817.1 carboxypeptidase-like regulatory domain-containing protein [Gemmatimonadaceae bacterium] diamond 252 135 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
27451571 27451571 PRJNA1167252_P_NODE_27703_length_245_cov_0.906977_g27430_i0 PRJNA1167252 27703 245 0.906977 2.22209365 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 115 3.7599999999999997e-31   NR MBP2649092.1 2026742 g27430 i0 81.2 0.844897959183673 69 13 84.5 0 39 245 1 69 MBP2649092.1 hypothetical protein [Gemmatimonadota bacterium] diamond 207 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
27546065 27546065 PRJNA1167252_P_NODE_24984_length_249_cov_0.886364_g24711_i0 PRJNA1167252 24984 249 0.886364 2.20704636 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 74.3 1.69e-15   NR HEV8454748.1 2448054 g24711 i0 69.4 0.590361445783133 49 15 59 0 148 2 1 49 HEV8454748.1 hypothetical protein [Gemmatimonadales bacterium] diamond 147 74.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27546066 27546066 PRJNA1167252_P_NODE_25584_length_248_cov_0.891429_g25311_i0 PRJNA1167252 25584 248 0.891429 2.21074392 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 147 4.74e-39   NR HVQ47776.1 2448054 g25311 i0 92.6 1.97177419354839 81 6 98 0 248 6 556 636 HVQ47776.1 ATP-binding protein [Gemmatimonadales bacterium] diamond 489 147 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
27786472 27786472 PRJNA1167252_P_NODE_27664_length_245_cov_0.906977_g27391_i0 PRJNA1167252 27664 245 0.906977 2.22209365 Bacteria 2 Bacteria Bacteria 145 1.06e-40   NR MFO0269486.1 2026742 g27391 i0 90.1 1.98367346938776 81 8 99.2 0 243 1 32 112 MFO0269486.1 phage major capsid protein [Gemmatimonadota bacterium] diamond 486 145 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28177282 28177282 PRJNA1167252_P_NODE_26626_length_247_cov_0.896552_g26353_i0 PRJNA1167252 26626 247 0.896552 2.21448344 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 92.8 4.35e-20   NR MDP9201615.1 2026742 g26353 i0 56.1 0.995951417004049 82 36 99.6 0 2 247 12 93 MDP9201615.1 nucleotidyltransferase [Gemmatimonadota bacterium] diamond 246 92.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29125044 29125044 PRJNA1167252_P_NODE_23289_length_252_cov_0.871508_g23016_i0 PRJNA1167252 23289 252 0.871508 2.19620016 Longimicrobium sp. 2029185 Bacteria Bacteria 172 1.78e-50   NR HEX5870329.1 2029185 g23016 i0 97.6 1 84 2 100 0 252 1 70 153 HEX5870329.1 lysylphosphatidylglycerol synthase domain-containing protein [Longimicrobium sp.] diamond 252 172 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
29598023 29598023 PRJNA1167252_P_NODE_26230_length_247_cov_0.896552_g25957_i0 PRJNA1167252 26230 247 0.896552 2.21448344 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 125 4.32e-31   NR HEU4588275.1 2448054 g25957 i0 73.2 5.97570850202429 82 22 99.6 0 2 247 829 910 HEU4588275.1 FAD-binding and (Fe-S)-binding domain-containing protein [Gemmatimonadales bacterium] diamond 1476 125 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30261912 30261912 PRJNA1167252_P_NODE_27032_length_246_cov_0.901734_g26759_i0 PRJNA1167252 27032 246 0.901734 2.21826564 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 91.7 9e-20   NR MEX1186221.1 2026741 g26759 i0 94.3 0.646341463414634 53 3 64.6 0 246 88 299 351 MEX1186221.1 DNA polymerase III subunit delta [Gemmatimonadaceae bacterium] diamond 159 91.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30293668 30293668 PRJNA1167252_P_NODE_27652_length_245_cov_0.906977_g27379_i0 PRJNA1167252 27652 245 0.906977 2.22209365 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 63.2 2.36e-9   NR HEX5521742.1 3047548 g27379 i0 70.7 0.502040816326531 41 12 50.2 0 243 121 413 453 HEX5521742.1 cyclopropane-fatty-acyl-phospholipid synthase family protein [Longimicrobiaceae bacterium] diamond 123 63.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
30325401 30325401 PRJNA1167252_P_NODE_24172_length_251_cov_0.876404_g23899_i0 PRJNA1167252 24172 251 0.876404 2.19977404 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 89.4 1.33e-18   NR HEY0243418.1 2026741 g23899 i0 62.2 0.884462151394422 74 28 88.4 0 224 3 224 297 HEY0243418.1 NosD domain-containing protein [Gemmatimonadaceae bacterium] diamond 222 89.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30419996 30419996 PRJNA1167252_P_NODE_26233_length_247_cov_0.896552_g25960_i0 PRJNA1167252 26233 247 0.896552 2.21448344 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 96.7 3.5e-21   NR HET9726630.1 2448054 g25960 i0 83.3 0.65587044534413 54 9 65.6 0 85 246 1 54 HET9726630.1 NADH-quinone oxidoreductase subunit C [Gemmatimonadales bacterium] diamond 162 96.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30609101 30609101 PRJNA1167252_P_NODE_25953_length_248_cov_0.891429_g25680_i0 PRJNA1167252 25953 248 0.891429 2.21074392 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 47 0.0011   NR HZM27506.1 2448054 g25680 i0 78.6 0.338709677419355 28 6 33.9 0 165 82 147 174 HZM27506.1 PD-(D/E)XK nuclease family protein [Gemmatimonadales bacterium] diamond 84 47 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30703959 30703959 PRJNA1167252_P_NODE_29634_length_242_cov_0.911243_g29361_i0 PRJNA1167252 29634 242 0.911243 2.20520806 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 85.9 4.93e-20   NR HXL05390.1 2448054 g29361 i0 65.6 1.51239669421488 61 20 74.4 1 241 62 7 67 HXL05390.1 hypothetical protein [Gemmatimonadales bacterium] diamond 366 85.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31304376 31304376 PRJNA1167252_P_NODE_26255_length_247_cov_0.896552_g25982_i0 PRJNA1167252 26255 247 0.896552 2.21448344 Gemmatimonas sp. 1962908 Bacteria Bacteria 106 1.7799999999999994e-24   NR WP_411280678.1 1962908 g25982 i0 63.4 0.995951417004049 82 30 99.6 0 247 2 694 775 WP_411280678.1 glycosyltransferase [Gemmatimonas sp.] diamond 246 106 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
32063524 32063524 PRJNA1167252_P_NODE_29278_length_242_cov_0.923077_g29005_i0 PRJNA1167252 29278 242 0.923077 2.23384634 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.3 0.0102   NR MDH3297208.1 2026742 g29005 i0 43.5 0.570247933884298 46 24 54.5 1 141 10 138 183 MDH3297208.1 cytochrome c3 family protein [Gemmatimonadota bacterium] diamond 138 44.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32758773 32758773 PRJNA1167252_P_NODE_25600_length_248_cov_0.891429_g25327_i0 PRJNA1167252 25600 248 0.891429 2.21074392 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 163 5.09e-49   NR HSE53982.1 2448054 g25327 i0 100 1.98387096774194 82 0 99.2 0 247 2 113 194 HSE53982.1 chemotaxis protein CheC [Gemmatimonadales bacterium] diamond 492 163 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;