RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1167252", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Rokuibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Rokuibacteriota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1167252 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27514493 27514493 PRJNA1167252_P_NODE_27543_length_245_cov_0.906977_g27270_i0 PRJNA1167252 27543 245 0.906977 2.22209365 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 45.8 0.00304   NR PYM49167.1 2053607 g27270 i0 85.7 0.342857142857143 28 4 34.3 0 160 243 1 28 PYM49167.1 MAG: sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB [Candidatus Rokuibacteriota bacterium] diamond 84 45.8 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
30672291 30672291 PRJNA1167252_P_NODE_25993_length_248_cov_0.891429_g25720_i0 PRJNA1167252 25993 248 0.891429 2.21074392 Candidatus Rokuibacteriota bacterium 2053607 Bacteria Bacteria 137 2.66e-38   NR PYN87289.1 2053607 g25720 i0 84.1 1.98387096774194 82 13 99.2 0 1 246 154 235 PYN87289.1 MAG: IclR family transcriptional regulator [Candidatus Rokuibacteriota bacterium] diamond 492 137 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;