RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1167252", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Binatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Binatota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1167252 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29724371 29724371 PRJNA1167252_P_NODE_24210_length_251_cov_0.876404_g23937_i0 PRJNA1167252 24210 251 0.876404 2.19977404 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 150 6.79e-43   NR HEX9272208.1 2838779 g23937 i0 89.2 0.99203187250996006 83 9 99.2 0 1 249 109 191 HEX9272208.1 lipopolysaccharide kinase InaA family protein [Candidatus Binatia bacterium] diamond 249 150 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
30009106 30009106 PRJNA1167252_P_NODE_28691_length_243_cov_0.917647_g28418_i0 PRJNA1167252 28691 243 0.917647 2.22988221 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 145 7.74e-39   NR HSQ15296.1 2838779 g28418 i0 93.8 0.987654320987654 80 5 98.8 0 3 242 399 478 HSQ15296.1 efflux RND transporter permease subunit [Candidatus Binatia bacterium] diamond 240 145 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium
30166722 30166722 PRJNA1167252_P_NODE_26352_length_247_cov_0.896552_g26079_i0 PRJNA1167252 26352 247 0.896552 2.21448344 Candidatus Binatia bacterium 2838779 Bacteria Bacteria 134 1.05e-36   NR HJX09954.1 2838779 g26079 i0 77.8 0.983805668016194 81 18 98.4 0 246 4 85 165 HJX09954.1 sugar ABC transporter substrate-binding protein [Candidatus Binatia bacterium] diamond 243 134 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia       Candidatus Binatia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;