RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1166865", tax_phylum = "Tubulinea" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 4 ✖

tax_phylum 1

  • Tubulinea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1166865 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4139058 4139058 PRJNA1166865_P_NODE_16544_length_527_cov_1.658590_g16303_i0 PRJNA1166865 16544 527 1.65859 8.7407693 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 918 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g16303 i0 98.102 49.5426944971537 527 10 100 0 1 527 2779 2253 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 26109 918 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13067520 13067520 PRJNA1166865_P_NODE_85011_length_246_cov_0.890173_g84770_i0 PRJNA1166865 85011 246 0.890173 2.18982558 Lobosea sp. Borok 297386 Tubulinea other_Eukaryota 420 5.29e-113   NTclustered gi|54306228|gb|AY626163.1| 297386 g84770 i0 97.561 99.349593495935 246 5 100 1 1 246 1004 760 Lobosea sp. Borok small subunit ribosomal RNA gene, partial sequence blastn 24440 420 1 Eukaryota Amoebozoa   Tubulinea         Lobosea sp. Borok
19439223 19439223 PRJNA1166865_P_NODE_58336_length_289_cov_2.532407_g58095_i0 PRJNA1166865 58336 289 2.532407 7.31865623 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 479 1.0399999999999996e-130   NTclustered gi|300078496|gb|GU001158.1| 5778 g58095 i0 96.54 5.88927335640138 289 10 100 0 1 289 1247 1535 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1702 479 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
21990400 21990400 PRJNA1166865_P_NODE_77178_length_250_cov_0.870056_g76937_i0 PRJNA1166865 77178 250 0.870056 2.17514 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 385 1.97e-102   NTclustered gi|909719645|gb|KT185625.1| 5778 g76937 i0 94.444 27.888 252 10 100 4 1 250 7009 6760 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6972 385 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;