RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1166865", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1166865 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31051826 31051826 PRJNA1166865_P_NODE_89155_length_244_cov_0.900585_g88914_i0 PRJNA1166865 89155 244 0.900585 2.1974274 Vulcanisaeta thermophila 867917 Archaea Archaea 60.5 1.84e-9   NR WP_069807737.1 867917 g88914 i0 60.5 0.528688524590164 43 17 52.9 0 103 231 3 45 WP_069807737.1 peptidyl-tRNA hydrolase Pth2 [Vulcanisaeta thermophila] diamond 129 60.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Thermoproteales Thermoproteaceae Vulcanisaeta Vulcanisaeta thermophila
31968566 31968566 PRJNA1166865_P_NODE_41298_length_340_cov_1.153558_g41057_i0 PRJNA1166865 41298 340 1.153558 3.9220972 Saccharolobus caldissimus 1702097 Archaea Archaea 55.5 6.67e-7   NR WP_229570762.1 1702097 g41057 i0 33.3 5.03823529411765 111 71 97.9 1 337 5 1 108 WP_229570762.1 universal stress protein [Saccharolobus caldissimus] diamond 1713 55.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Saccharolobus Saccharolobus caldissimus
32221838 32221838 PRJNA1166865_P_NODE_88738_length_244_cov_0.900585_g88497_i0 PRJNA1166865 88738 244 0.900585 2.1974274 Caldisphaera sp. 2060322 Archaea Archaea 62.8 2.63e-9   NR MFP3144362.1 2060322 g88497 i0 45.1 1.73360655737705 71 35 82.4 1 234 34 186 256 MFP3144362.1 ABC transporter ATP-binding protein [Caldisphaera sp.] diamond 423 62.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Acidilobales Caldisphaeraceae Caldisphaera Caldisphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;