RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1166865", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

  • Nitrososphaerota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1166865 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28322938 28322938 PRJNA1166865_P_NODE_49146_length_314_cov_1.917012_g48905_i0 PRJNA1166865 49146 314 1.917012 6.01941768 root 1 Root_unresolved Root_unresolved 85.9 4.34e-17   NR WP_014964289.1 1229909 g48905 i0 47.5 3.99363057324841 99 43 90.8 4 313 29 79 172 WP_014964289.1 tyrosinase family protein [Candidatus Nitrosopumilus sediminis] diamond 1254 86.7 0.990772779700115 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Candidatus Nitrosopumilus sediminis
29080896 29080896 PRJNA1166865_P_NODE_41848_length_338_cov_1.162264_g41607_i0 PRJNA1166865 41848 338 1.162264 3.92845232 root 1 Root_unresolved Root_unresolved 58.2 1e-7   NR HXQ91941.1 2268197 g41607 i0 39.5 3.72781065088757 81 48 71.9 1 247 5 75 154 HXQ91941.1 universal stress protein [Nitrososphaerales archaeon] diamond 1260 58.2 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales     Nitrososphaerales archaeon
29250823 29250823 PRJNA1166865_P_NODE_10949_length_643_cov_1.470175_g10717_i0 PRJNA1166865 10949 643 1.470175 9.45322525 Nitrosopumilaceae archaeon 2202732 Archaea Archaea 68.9 1.48e-10   NR HKC79329.1 2202732 g10717 i0 30.6 0.732503888024883 157 81 72.8 6 489 22 52 181 HKC79329.1 fibronectin type III domain-containing protein [Nitrosopumilaceae archaeon] diamond 471 68.9 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae   Nitrosopumilaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;