RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1166865", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1166865 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26977116 26977116 PRJNA1166865_P_NODE_34742_length_367_cov_1.571429_g34501_i0 PRJNA1166865 34742 367 1.571429 5.76714443 Victivallales bacterium 2212475 Bacteria Bacteria 77 9.31e-14   NR HJO93138.1 2212475 g34501 i0 36 1.92098092643052 125 73 96.5 3 365 12 3 127 HJO93138.1 histidine phosphatase family protein [Victivallales bacterium] diamond 705 77 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium
32317039 32317039 PRJNA1166865_P_NODE_79039_length_249_cov_0.875000_g78798_i0 PRJNA1166865 79039 249 0.875 2.17875 Lentisphaerae bacterium GWF2_49_21 1798573 Bacteria Bacteria 65.9 1.58e-10   NR OGV41101.1 1798573 g78798 i0 44.6 2 83 46 100 0 249 1 181 263 OGV41101.1 MAG: pyrroline-5-carboxylate reductase [Lentisphaerae bacterium GWF2_49_21] diamond 498 65.9 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerae bacterium GWF2_49_21

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;