contig_metadata
11 rows where bioproject = "PRJNA1164198" and tax_phylum = "Mycoplasmatota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2314770 | 2314770 | PRJNA1164198_P_NODE_1622_length_959_cov_5.329571_g1453_i0 | PRJNA1164198 | 1622 | 959 | 5.329571 | 51.11058589 | Ureaplasma | 2129 | Bacteria | Bacteria | 1260 | 0 | NTclustered | gi|2177595200|gb|CP086123.1| | 2130 | g1453 | i0 | 90.501 | 147.914494264859 | 958 | 85 | 99 | 6 | 1 | 954 | 343718 | 344673 | Ureaplasma urealyticum strain MIN-201 chromosome, complete genome | blastn | 141850 | 1260 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | Ureaplasma urealyticum | |||
| 2862885 | 2862885 | PRJNA1164198_P_NODE_9023_length_414_cov_5.416422_g8758_i0 | PRJNA1164198 | 9023 | 414 | 5.416422 | 22.42398708 | uncultured Ureaplasma sp. | 293430 | Bacteria | Bacteria | 675 | 0 | NTclustered | gi|1899225129|gb|MT967601.1| | 293430 | g8758 | i0 | 96.135 | 106.070048309179 | 414 | 15 | 100 | 1 | 1 | 414 | 1457 | 1045 | Uncultured Ureaplasma sp. clone asv_100_2225 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 43913 | 675 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | uncultured Ureaplasma sp. | |||
| 4867544 | 4867544 | PRJNA1164198_P_NODE_16904_length_300_cov_2.625551_g16635_i0 | PRJNA1164198 | 16904 | 300 | 2.625551 | 7.876653 | Mycoplasmoidaceae | 2790998 | Bacteria | Bacteria | 490 | 4.99e-134 | NTclustered | gi|119369652|gb|EF061769.1| | 2097 | g16635 | i0 | 96.333 | 107.613333333333 | 300 | 8 | 99 | 2 | 1 | 298 | 24 | 322 | Mycoplasma genitalium strain ATCC 33530 23S ribosomal RNA gene, partial sequence | blastn | 32284 | 490 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Mycoplasmoides | Mycoplasmoides genitalium | |||
| 6142339 | 6142339 | PRJNA1164198_P_NODE_15505_length_314_cov_2.070539_g15236_i0 | PRJNA1164198 | 15505 | 314 | 2.070539 | 6.50149246 | Malacoplasma | 2791001 | Bacteria | Bacteria | 512 | 1.12e-140 | NTclustered | gi|470476279|ref|NR_076329.1| | 28227 | g15236 | i0 | 96.178 | 135.496815286624 | 314 | 11 | 100 | 1 | 1 | 314 | 1774 | 2086 | Mycoplasma penetrans strain HF-2 23S ribosomal RNA gene, complete sequence | blastn | 42546 | 512 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Malacoplasma | Malacoplasma penetrans | |||
| 13065558 | 13065558 | PRJNA1164198_P_NODE_23591_length_255_cov_2.032967_g23322_i0 | PRJNA1164198 | 23591 | 255 | 2.032967 | 5.18406585 | uncultured Mycoplasmatota bacterium | 658143 | Bacteria | Bacteria | 217 | 7.76e-52 | NTclustered | gi|2187163482|emb|OV788640.1| | 658143 | g23322 | i0 | 82.283 | 402.243137254902 | 254 | 42 | 99 | 3 | 1 | 253 | 373743 | 373492 | uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 | blastn | 102572 | 217 | 1 | Bacteria | Bacillati | Mycoplasmatota | uncultured Mycoplasmatota bacterium | ||||||
| 15614733 | 15614733 | PRJNA1164198_P_NODE_11393_length_368_cov_2.281356_g11125_i0 | PRJNA1164198 | 11393 | 368 | 2.281356 | 8.39539008 | uncultured Mycoplasma sp. | 167967 | Bacteria | Bacteria | 616 | 9.88e-172 | NTclustered | gi|1328205649|gb|MG786619.1| | 167967 | g11125 | i0 | 100 | 100.942934782609 | 333 | 0 | 90 | 0 | 36 | 368 | 1 | 333 | Uncultured Mycoplasma sp. clone 1 16S ribosomal RNA gene, partial sequence | blastn | 37147 | 616 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mollicutes | Mycoplasmatales | Mycoplasmataceae | Mycoplasma | uncultured Mycoplasma sp. | ||
| 16889126 | 16889126 | PRJNA1164198_P_NODE_5294_length_547_cov_5.873418_g5041_i0 | PRJNA1164198 | 5294 | 547 | 5.873418 | 32.12759646 | uncultured Ureaplasma sp. | 293430 | Bacteria | Bacteria | 689 | 0 | NTclustered | gi|1899225129|gb|MT967601.1| | 293430 | g5041 | i0 | 93.39 | 112.899451553931 | 469 | 25 | 85 | 5 | 83 | 547 | 2225 | 1759 | Uncultured Ureaplasma sp. clone asv_100_2225 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 61756 | 689 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | uncultured Ureaplasma sp. | |||
| 20165832 | 20165832 | PRJNA1164198_P_NODE_11096_length_373_cov_2.286667_g10828_i0 | PRJNA1164198 | 11096 | 373 | 2.286667 | 8.52926791 | Malacoplasma | 2791001 | Bacteria | Bacteria | 529 | 1.3399999999999997e-145 | NTclustered | gi|470476279|ref|NR_076329.1| | 28227 | g10828 | i0 | 92.267 | 117.983914209115 | 375 | 25 | 100 | 4 | 1 | 373 | 138 | 510 | Mycoplasma penetrans strain HF-2 23S ribosomal RNA gene, complete sequence | blastn | 44008 | 529 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Malacoplasma | Malacoplasma penetrans | |||
| 20165866 | 20165866 | PRJNA1164198_P_NODE_3236_length_701_cov_4.184713_g3002_i0 | PRJNA1164198 | 3236 | 701 | 4.184713 | 29.33483813 | Ureaplasma | 2129 | Bacteria | Bacteria | 1068 | 0 | NTclustered | gi|1699403359|gb|CP041200.1| | 2130 | g3002 | i0 | 94.388 | 150.895863052782 | 695 | 39 | 99 | 0 | 2 | 696 | 151485 | 152179 | Ureaplasma urealyticum strain 132 chromosome, complete genome | blastn | 105778 | 1068 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | Ureaplasma urealyticum | |||
| 25265802 | 25265802 | PRJNA1164198_P_NODE_2680_length_761_cov_3.465116_g2467_i0 | PRJNA1164198 | 2680 | 761 | 3.465116 | 26.36953276 | Malacoplasma | 2791001 | Bacteria | Bacteria | 1081 | 0 | NTclustered | gi|470476279|ref|NR_076329.1| | 28227 | g2467 | i0 | 92.563 | 146.065703022339 | 753 | 56 | 99 | 0 | 9 | 761 | 2779 | 2027 | Mycoplasma penetrans strain HF-2 23S ribosomal RNA gene, complete sequence | blastn | 111156 | 1081 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Malacoplasma | Malacoplasma penetrans | |||
| 31051779 | 31051779 | PRJNA1164198_P_NODE_26595_length_249_cov_0.886364_g26326_i0 | PRJNA1164198 | 26595 | 249 | 0.886364 | 2.20704636 | Candidatus Ureaplasma intestinipullorum | 2838770 | Bacteria | Bacteria | 73.6 | 3.18e-13 | NR | MBU3830819.1 | 2838770 | g26326 | i0 | 68.5 | 0.650602409638554 | 54 | 17 | 65.1 | 0 | 162 | 1 | 1 | 54 | MBU3830819.1 ECF transporter S component [Candidatus Ureaplasma intestinipullorum] | diamond | 162 | 73.6 | 1 | Bacteria | Bacillati | Mycoplasmatota | Mycoplasmoidales | Mycoplasmoidaceae | Ureaplasma | Candidatus Ureaplasma intestinipullorum |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;