RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1164198" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1164198 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30767165 30767165 PRJNA1164198_P_NODE_18034_length_291_cov_1.862385_g17765_i0 PRJNA1164198 18034 291 1.862385 5.41954035 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 44.7 0.0123   NR MES2522041.1 2026742 g17765 i0 33.7 0.88659793814433 86 51 82.5 2 21 260 89 174 MES2522041.1 ABC transporter permease [Gemmatimonadota bacterium] diamond 258 44.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30956915 30956915 PRJNA1164198_P_NODE_27334_length_248_cov_0.891429_g27065_i0 PRJNA1164198 27334 248 0.891429 2.21074392 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 125 4.29e-31   NR HXY69516.1 2448054 g27065 i0 62.2 1.98387096774194 82 31 99.2 0 2 247 282 363 HXY69516.1 TIM-barrel domain-containing protein [Gemmatimonadales bacterium] diamond 492 125 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31399433 31399433 PRJNA1164198_P_NODE_8316_length_433_cov_0.861111_g8054_i0 PRJNA1164198 8316 433 0.861111 3.72861063 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 154 6.95e-41   NR NNE08319.1 2026742 g8054 i0 48.6 0.983833718244804 142 66 98.4 2 433 8 194 328 NNE08319.1 T9SS type A sorting domain-containing protein [Gemmatimonadota bacterium] diamond 426 154 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;