RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1164198" and tax_phylum = "Fornicata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1164198 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20713326 20713326 PRJNA1164198_P_NODE_27677_length_247_cov_0.896552_g27408_i0 PRJNA1164198 27677 247 0.896552 2.21448344 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 185 2.11e-42   NTclustered gi|339759369|dbj|AB600297.1| 201153 g27408 i0 80.932 40.7125506072874 236 43 95 2 1 235 235 1 Carpediemonas membranifera hsp90 gene for heat shock protein 90, partial cds, strain: BICM blastn 10056 185 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
27419940 27419940 PRJNA1164198_P_NODE_26143_length_250_cov_0.881356_g25874_i0 PRJNA1164198 26143 250 0.881356 2.20339 Kipferlia bialata 797122 Fornicata other_Eukaryota 137 3.72e-38   NR GCA62312.1 797122 g25874 i0 77.1 18.912 83 19 99.6 0 249 1 121 203 GCA62312.1 ribosomal protein L2 [Kipferlia bialata] diamond 4728 137 1 Eukaryota Metamonada   Fornicata       Kipferlia Kipferlia bialata
32158646 32158646 PRJNA1164198_P_NODE_6098_length_509_cov_1.323394_g5841_i0 PRJNA1164198 6098 509 1.323394 6.73607546 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 102 4.49e-24   NR KAG9392754.1 201153 g5841 i0 35.3 1.00196463654224 170 100 99 4 6 509 1 162 KAG9392754.1 Translationally controlled tumor protein [Carpediemonas membranifera] diamond 510 102 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;