RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1164198" and tax_phylum = "Cercozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1164198 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10515685 10515685 PRJNA1164198_P_NODE_9729_length_399_cov_0.957055_g9462_i0 PRJNA1164198 9729 399 0.957055 3.81864945 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 174 4.3e-53   NR AAT09077.1 227086 g9462 i0 71.4 0.947368421052632 126 36 94.7 0 20 397 19 144 AAT09077.1 transcription factor BTF3 [Bigelowiella natans] diamond 378 174 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
21988734 21988734 PRJNA1164198_P_NODE_28578_length_246_cov_0.901734_g28309_i0 PRJNA1164198 28578 246 0.901734 2.21826564 Lecythium sp. 3678_261K 238773 SAR_Eukaryotes SAR_Eukaryotes 416 6.839999999999999e-112   NTclustered gi|33089893|gb|AY283756.1| 238773 g28309 i0 97.154 86.5121951219512 246 7 100 0 1 246 338 583 Lecythium sp. 3678_261K actin gene, partial cds blastn 21282 416 1 Eukaryota Sar   Cercozoa Thecofilosea Tectofilosida Chlamydophryidae Lecythium Lecythium sp. 3678_261K
24537945 24537945 PRJNA1164198_P_NODE_5340_length_545_cov_232.921610_g5087_i0 PRJNA1164198 5340 545 232.92161 1269.4227745 Amorphochlora amoebiformis 1561963 SAR_Eukaryotes SAR_Eukaryotes 73.1 4.11e-8   NTclustered gi|893150443|dbj|AB996604.1| 1561963 g5087 i0 80.18 9.77064220183486 111 10 20 11 438 545 766 867 Amorphochlora amoebiformis nucleomorph DNA, chromosome: 3, complete sequence, strain: CCMP2058 blastn 5325 73.1 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Amorphochlora Amorphochlora amoebiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;