RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1164198" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1164198 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8692457 8692457 PRJNA1164198_P_NODE_23707_length_255_cov_0.917582_g23438_i0 PRJNA1164198 23707 255 0.917582 2.3398341 Fimbriimonas 1005038 Bacteria Bacteria 305 1.61e-78   NTclustered gi|663071213|gb|CP007139.1| 661478 g23438 i0 88.327 156.964705882353 257 26 100 4 1 255 29215 28961 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 40026 305 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
17617258 17617258 PRJNA1164198_P_NODE_9094_length_413_cov_1.517647_g8829_i0 PRJNA1164198 9094 413 1.517647 6.26788211 Fimbriimonas 1005038 Bacteria Bacteria 758 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g8829 i0 99.758 294.794188861985 413 1 100 0 1 413 27007 27419 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 121750 758 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
21441445 21441445 PRJNA1164198_P_NODE_15517_length_314_cov_1.800830_g15248_i0 PRJNA1164198 15517 314 1.80083 5.6546062 Fimbriimonas 1005038 Bacteria Bacteria 422 1.94e-113   NTclustered gi|663071213|gb|CP007139.1| 661478 g15248 i0 91.054 304.471337579618 313 26 99 2 3 314 27577 27266 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 95604 422 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
22716373 22716373 PRJNA1164198_P_NODE_10798_length_378_cov_1.790164_g10530_i0 PRJNA1164198 10798 378 1.790164 6.76681992 Fimbriimonas 1005038 Bacteria Bacteria 577 4.7999999999999986e-160   NTclustered gi|663071213|gb|CP007139.1| 661478 g10530 i0 94.18 252.015873015873 378 22 100 0 1 378 28930 28553 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 95262 577 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;