RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1164198", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA1164198 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8692481 8692481 PRJNA1164198_P_NODE_9787_length_398_cov_1.107692_g9520_i0 PRJNA1164198 9787 398 1.107692 4.40861416 Sphaerochaeta 399320 Bacteria Bacteria 549 1.1099999999999999e-151   NTclustered gi|324025087|gb|CP002541.1| 158189 g9520 i0 91.858 212.195979899497 393 32 99 0 4 396 1242415 1242807 Sphaerochaeta globosa str. Buddy, complete genome blastn 84454 549 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta Sphaerochaeta globosa
11790549 11790549 PRJNA1164198_P_NODE_19070_length_284_cov_1.127962_g18801_i0 PRJNA1164198 19070 284 1.127962 3.20341208 uncultured Sphaerochaeta sp. 886478 Bacteria Bacteria 337 6.46e-88   NTclustered gi|2621705266|emb|OY763408.1| 886478 g18801 i0 88.571 76.3204225352113 280 28 98 3 7 284 1574187 1574464 MAG: uncultured Sphaerochaeta sp. isolate a535b126-96cf-44a5-a161-074881f659df genome assembly, chromosome: 1 blastn 21675 337 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae Sphaerochaeta uncultured Sphaerochaeta sp.
14340901 14340901 PRJNA1164198_P_NODE_21312_length_269_cov_1.392857_g21043_i0 PRJNA1164198 21312 269 1.392857 3.74678533 uncultured Spirochaetaceae bacterium 201186 Bacteria Bacteria 488 1.5799999999999998e-133   NTclustered gi|2591539359|gb|OR657309.1| 201186 g21043 i0 99.625 105.650557620818 267 1 99 0 3 269 440 174 Uncultured Spirochaetaceae bacterium clone CH2 PE 258 16S ribosomal RNA gene, partial sequence blastn 28420 488 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae   uncultured Spirochaetaceae bacterium
28208883 28208883 PRJNA1164198_P_NODE_28946_length_245_cov_0.906977_g28677_i0 PRJNA1164198 28946 245 0.906977 2.22209365 Spirochaetota bacterium 2202144 Bacteria Bacteria 87 4.29e-18   NR NOY08952.1 2202144 g28677 i0 53.1 0.991836734693878 81 37 98 1 241 2 204 284 NOY08952.1 aspartate-semialdehyde dehydrogenase [Spirochaetota bacterium] diamond 243 87 1 Bacteria   Pseudomonadati Spirochaetota         Spirochaetota bacterium
28417966 28417966 PRJNA1164198_P_NODE_25006_length_252_cov_0.871508_g24737_i0 PRJNA1164198 25006 252 0.871508 2.19620016 Candidatus Ornithospirochaeta 2840653 Bacteria Bacteria 124 8.35e-31   NR MBO8468212.1 2840897 g24737 i0 74.7 1.97619047619048 83 21 98.8 0 251 3 48 130 MBO8468212.1 transcription elongation factor GreA [Candidatus Ornithospirochaeta stercoravium] diamond 498 124 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Spirochaetaceae Candidatus Ornithospirochaeta Candidatus Ornithospirochaeta stercoravium
32285389 32285389 PRJNA1164198_P_NODE_27519_length_247_cov_1.511494_g27250_i0 PRJNA1164198 27519 247 1.511494 3.73339018 Treponema sp. 166 Bacteria Bacteria 41.2 0.0406   NR MBR1613865.1 166 g27250 i0 48.6 0.425101214574899 35 18 42.5 0 247 143 71 105 MBR1613865.1 CAP domain-containing protein [Treponema sp.] diamond 105 41.2 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;