RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1164198", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1164198 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14340925 14340925 PRJNA1164198_P_NODE_26632_length_249_cov_0.886364_g26363_i0 PRJNA1164198 26632 249 0.886364 2.20704636 root 1 Root_unresolved Root_unresolved 111 3.83e-29   NR KAJ3366965.1 64505 g26363 i0 67.1 49.7951807228916 79 26 95.2 0 239 3 57 135 KAJ3366965.1 hypothetical protein GGF32_000026 [Allomyces javanicus] diamond 12399 112 0.991071428571429 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Allomyces Allomyces javanicus
29597967 29597967 PRJNA1164198_P_NODE_12270_length_354_cov_2.725979_g12002_i0 PRJNA1164198 12270 354 2.725979 9.64996566 Paraphysoderma sedebokerense 1500003 Fungi Fungi 92.8 1.54e-19   NR KAI9139552.1 1500003 g12002 i0 42.7 3.11864406779661 124 62 99.2 4 1 351 232 353 KAI9139552.1 hypothetical protein BKA69DRAFT_1040063 [Paraphysoderma sedebokerense] diamond 1104 92.8 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense
30735507 30735507 PRJNA1164198_P_NODE_23574_length_255_cov_2.571429_g23305_i0 PRJNA1164198 23574 255 2.571429 6.55714395 Paraphysoderma sedebokerense 1500003 Fungi Fungi 78.6 1.81e-16   NR KAI9144926.1 1500003 g23305 i0 53.2 0.929411764705882 79 32 92.9 1 14 250 2 75 KAI9144926.1 ribosomal protein L28 [Paraphysoderma sedebokerense] diamond 237 78.6 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Paraphysoderma Paraphysoderma sedebokerense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;