RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1164198", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1164198 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7965265 7965265 PRJNA1164198_P_NODE_4227_length_612_cov_2.050093_g3979_i0 PRJNA1164198 4227 612 2.050093 12.54656916 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 226 6.87e-72   NR CEP02281.1 37360 g3979 i0 59.8 0.975490196078431 199 77 97.5 2 14 610 1 196 CEP02281.1 hypothetical protein PBRA_008865 [Plasmodiophora brassicae] diamond 597 226 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
26850759 26850759 PRJNA1164198_P_NODE_18121_length_291_cov_1.110092_g17852_i0 PRJNA1164198 18121 291 1.110092 3.23036772 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 120 4.27e-29   NR CEP02690.1 37360 g17852 i0 55.8 0.979381443298969 95 41 97.9 1 287 3 556 649 CEP02690.1 hypothetical protein PBRA_002657 [Plasmodiophora brassicae] diamond 285 120 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28714284 28714284 PRJNA1164198_P_NODE_28827_length_245_cov_0.906977_g28558_i0 PRJNA1164198 28827 245 0.906977 2.22209365 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 113 2.99e-27   NR CEP00440.1 37360 g28558 i0 68.3 1.00408163265306 82 25 99.2 1 2 244 407 488 CEP00440.1 hypothetical protein PBRA_001494 [Plasmodiophora brassicae] diamond 246 113 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;