RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1164198", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA1164198 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10515574 10515574 PRJNA1164198_P_NODE_16189_length_308_cov_0.842553_g15920_i0 PRJNA1164198 16189 308 0.842553 2.59506324 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 190 2.32e-59   NR AAK83154.1 5722 g15920 i0 84.3 374.532467532468 102 16 99.4 0 1 306 61 162 AAK83154.1 alpha-tubulin 1, partial [Trichomonas vaginalis] diamond 115356 190 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
29503457 29503457 PRJNA1164198_P_NODE_5930_length_517_cov_1.423423_g5675_i0 PRJNA1164198 5930 517 1.423423 7.35909691 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 195 3.69e-60   NR XP_068360038.1 1144522 g5675 i0 58.7 15.5976789168279 167 69 96.9 0 503 3 5 171 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 8064 195 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;