RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1164198", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1164198 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13065539 13065539 PRJNA1164198_P_NODE_18531_length_288_cov_1.153488_g18262_i0 PRJNA1164198 18531 288 1.153488 3.32204544 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 532 7.8e-147   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g18262 i0 100 95.6493055555556 288 0 100 0 1 288 1436 1723 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 27547 532 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011
14340966 14340966 PRJNA1164198_P_NODE_8972_length_416_cov_1.320700_g8707_i0 PRJNA1164198 8972 416 1.3207 5.494112 Copromyxa protea 931554 Tubulinea other_Eukaryota 603 8.809999999999998e-168   NTclustered gi|508737347|dbj|AB766053.1| 931554 g8707 i0 92.788 26.9254807692308 416 30 100 0 1 416 34 449 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 11201 603 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
23264240 23264240 PRJNA1164198_P_NODE_29279_length_244_cov_1.918129_g29010_i0 PRJNA1164198 29279 244 1.918129 4.68023476 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 396 8.829999999999997e-106   NTclustered gi|345294028|gb|JF694284.1| 1078852 g29010 i0 95.902 29.6844262295082 244 10 100 0 1 244 189 432 Pyxidicula operculata small subunit ribosomal RNA gene, partial sequence blastn 7243 396 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;