RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA1160211" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA1160211 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4866588 4866588 PRJNA1160211_S_NODE_229004_length_280_cov_13.048309_g227771_i0 PRJNA1160211 229004 280 13.048309 36.5352652 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 307 4.9900000000000007e-79   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g227771 i0 88.672 50.2071428571429 256 24 91 4 1 256 1881 1631 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 14058 307 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
5412020 5412020 PRJNA1160211_S_NODE_105025_length_447_cov_527.149733_g103798_i0 PRJNA1160211 105025 447 527.149733 2356.35930651 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 527 5.899999999999998e-145   NTclustered gi|909719645|gb|KT185625.1| 5778 g103798 i0 98.653 29.8232662192394 297 4 66 0 76 372 5480 5776 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13331 527 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6688207 6688207 PRJNA1160211_S_NODE_284386_length_239_cov_16.638554_g283153_i0 PRJNA1160211 284386 239 16.638554 39.76614406 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 394 3.099999999999999e-105   NTclustered gi|300078496|gb|GU001158.1| 5778 g283153 i0 99.537 2.2928870292887 216 1 90 0 1 216 3667 3452 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 548 394 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9966736 9966736 PRJNA1160211_S_NODE_247228_length_264_cov_2.188482_g245995_i0 PRJNA1160211 247228 264 2.188482 5.77759248 Vermamoeba 1260114 Tubulinea other_Eukaryota 449 7.320000000000001e-122   NTclustered gi|909719645|gb|KT185625.1| 5778 g245995 i0 98.431 47.9545454545455 255 4 97 0 1 255 5121 5375 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 12660 449 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10512797 10512797 PRJNA1160211_S_NODE_115709_length_428_cov_56.707042_g114480_i0 PRJNA1160211 115709 428 56.707042 242.70613976 Tubulinea group 04 sp. PPD16 1215999 Tubulinea other_Eukaryota 420 9.819999999999999e-113   NTclustered gi|399764279|gb|JQ271790.1| 1215999 g114480 i0 89.244 53.2172897196262 344 25 79 10 25 360 1468 1807 Tubulinea group 04 sp. PPD16 18S ribosomal RNA gene, partial sequence blastn 22777 420 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 04 sp. PPD16
11241372 11241372 PRJNA1160211_S_NODE_121689_length_418_cov_6.359420_g120460_i0 PRJNA1160211 121689 418 6.35942 26.5823756 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 508 1.99e-139   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g120460 i0 92.201 55.3444976076555 359 28 86 0 1 359 1162 804 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 23134 508 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
12516775 12516775 PRJNA1160211_S_NODE_102110_length_453_cov_3.752632_g100884_i0 PRJNA1160211 102110 453 3.752632 16.99942296 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 586 9.729999999999998e-163   NTclustered gi|399764264|gb|JQ271775.1| 1215986 g100884 i0 91.435 39.3377483443709 432 30 95 6 1 430 580 154 Tubulinea group 02 sp. 1HFKJ 18S ribosomal RNA gene, partial sequence blastn 17820 590 0.993220338983051 Eukaryota Amoebozoa   Tubulinea         Tubulinea group 02 sp. 1HFKJ
14338311 14338311 PRJNA1160211_S_NODE_154252_length_368_cov_23.467797_g153019_i0 PRJNA1160211 154252 368 23.467797 86.36149296 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 327 5.19e-85   NTclustered gi|511487963|gb|JX898537.1| 1260765 g153019 i0 86.601 1.47010869565217 306 29 82 10 58 357 1 300 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 541 327 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
15065860 15065860 PRJNA1160211_S_NODE_124652_length_413_cov_10.111765_g123423_i0 PRJNA1160211 124652 413 10.111765 41.76158945 Hartmannellidae 5776 Tubulinea other_Eukaryota 699 0   NTclustered gi|11527309|gb|AF293902.1|AF293902 136464 g123423 i0 98.974 93.089588377724 390 4 94 0 24 413 848 1237 Saccamoeba limax small subunit ribosomal RNA gene, complete sequence blastn 38446 704 0.992897727272727 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba limax
16340964 16340964 PRJNA1160211_S_NODE_204553_length_305_cov_16.879310_g203320_i0 PRJNA1160211 204553 305 16.87931 51.4818955 Hartmannellidae 5776 Tubulinea other_Eukaryota 514 3.02e-141   NTclustered gi|24527245|gb|AY145442.1| 211864 g203320 i0 97.059 83.2327868852459 306 7 100 2 1 305 1816 1512 Hartmannellidae sp. LOS7N/I small subunit ribosomal RNA gene, complete sequence blastn 25386 514 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae   Hartmannellidae sp. LOS7N/I
20710370 20710370 PRJNA1160211_S_NODE_106097_length_445_cov_81.231183_g104869_i0 PRJNA1160211 106097 445 81.231183 361.47876435 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 366 1.3499999999999996e-96   NTclustered gi|292559443|ref|NC_013986.1| 5778 g104869 i0 82.588 16.638202247191 425 64 95 9 1 422 26007 25590 Hartmannella vermiformis mitochondrion, complete genome blastn 7404 366 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;