RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1160211", tax_phylum = "Thermoproteota" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 5 ✖

tax_phylum 1

  • Thermoproteota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1160211 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2313367 2313367 PRJNA1160211_S_NODE_106122_length_445_cov_29.510753_g104894_i0 PRJNA1160211 106122 445 29.510753 131.32285085 root 1 Root_unresolved Root_unresolved 56.5 0.003   NTclustered gi|969874815|gb|CP013695.1| 2285 g104894 i0 100 0.528089887640449 30 0 7 0 416 445 41 12 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome blastn 235 56.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius
11241598 11241598 PRJNA1160211_S_NODE_17409_length_729_cov_10.028963_g16463_i0 PRJNA1160211 17409 729 10.028963 73.11114027 root 1 Root_unresolved Root_unresolved 56.5 0.006   NTclustered gi|969874815|gb|CP013695.1| 2285 g16463 i0 100 0.130315500685871 30 0 4 0 700 729 41 12 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome blastn 95 56.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius
11241932 11241932 PRJNA1160211_S_NODE_266469_length_249_cov_7.278409_g265236_i0 PRJNA1160211 266469 249 7.278409 18.12323841 root 1 Root_unresolved Root_unresolved 56.5 0.002   NTclustered gi|969874815|gb|CP013695.1| 2285 g265236 i0 100 0.943775100401606 30 0 12 0 220 249 41 12 Sulfolobus acidocaldarius strain NG05B_CO5_07 chromosome blastn 235 56.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Sulfolobales Sulfolobaceae Sulfolobus Sulfolobus acidocaldarius
23262438 23262438 PRJNA1160211_S_NODE_27839_length_663_cov_2.800000_g26755_i0 PRJNA1160211 27839 663 2.8 18.564 Ignisphaera sp. 2268142 Archaea Archaea 72.8 5.87e-13   NR MCI4435660.1 2268142 g26755 i0 43.9 0.3710407239819 82 40 37.1 3 476 231 4 79 MCI4435660.1 hypothetical protein [Ignisphaera sp.] diamond 246 72.8 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.
30261840 30261840 PRJNA1160211_S_NODE_259052_length_254_cov_6.629834_g257819_i0 PRJNA1160211 259052 254 6.629834 16.83977836 Thermoproteota archaeon 2056631 Archaea Archaea 115 5.049999999999999e-31   NR MDQ2685534.1 2056631 g257819 i0 98.3 0.68503937007874 58 1 68.5 0 231 58 2 59 MDQ2685534.1 hypothetical protein [Thermoproteota archaeon] diamond 174 115 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;