RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1160211" and tax_phylum = "Microsporidia"

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tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1160211 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10512960 10512960 PRJNA1160211_S_NODE_134749_length_397_cov_9.240741_g133517_i0 PRJNA1160211 134749 397 9.240741 36.68574177 Vittaforma corneae 42399 Fungi Fungi 394 5.48e-105   NTclustered gi|667639983|ref|XR_552275.1| 993615 g133517 i0 86.667 2.13853904282116 360 42 90 5 17 373 389 33 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 849 394 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
16886469 16886469 PRJNA1160211_S_NODE_15054_length_750_cov_10.206795_g14154_i0 PRJNA1160211 15054 750 10.206795 76.5509625 Vittaforma corneae 42399 Fungi Fungi 891 0   NTclustered gi|667639983|ref|XR_552275.1| 993615 g14154 i0 88.889 15.8413333333333 738 62 97 17 20 746 471 1199 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 11881 891 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae
20712169 20712169 PRJNA1160211_S_NODE_8077_length_853_cov_20.814103_g7374_i0 PRJNA1160211 8077 853 20.814103 177.54429859 Crispospora chironomi 856671 Fungi Fungi 1288 0   NTclustered gi|298919556|gb|GU130407.1| 856671 g7374 i0 94.611 94.3833528722157 835 39 97 4 24 853 319 1152 Crispospora chironomi small subunit ribosomal RNA gene, partial sequence blastn 80509 1288 1 Eukaryota Opisthokonta Fungi Microsporidia       Crispospora Crispospora chironomi
21440872 21440872 PRJNA1160211_S_NODE_5877_length_913_cov_146.772619_g5270_i0 PRJNA1160211 5877 913 146.772619 1340.03401147 Fungi 4751 Fungi Fungi 183 3.13e-41   NTclustered gi|1378896647|gb|MF278562.1| 1485682 g5270 i0 95.652 15.9715224534502 115 4 13 1 690 804 5537 5650 Mitosporidium daphniae strain UGP3 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14582 183 1 Eukaryota Opisthokonta Fungi Microsporidia       Mitosporidium Mitosporidium daphniae
24536367 24536367 PRJNA1160211_S_NODE_35220_length_628_cov_18.030631_g34100_i0 PRJNA1160211 35220 628 18.030631 113.23236268 Vittaforma corneae 42399 Fungi Fungi 660 0   NTclustered gi|667639983|ref|XR_552275.1| 993615 g34100 i0 86.262 31.0573248407643 626 65 98 20 1 615 1611 996 Vittaforma corneae ATCC 50505 28S ribosomal RNA (VICG_02297), rRNA blastn 19504 660 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vittaforma Vittaforma corneae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;