RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1160211", tax_phylum = "Cossaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Cossaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1160211 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4136971 4136971 PRJNA1160211_S_NODE_257604_length_256_cov_1.016393_g256371_i0 PRJNA1160211 257604 256 1.016393 2.60196608 Alphapolyomavirus quintihominis 1891726 Viruses Viruses 468 1.95e-127   NTclustered gi|1606663519|dbj|LC148294.1| 493803 g256371 i0 99.609 100 256 1 100 0 1 256 3873 3618 Merkel cell polyomavirus genes for large T antigen, VP1, VP2, complete cds, strain: JPN-TM-MCC2 blastn 25600 468 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Alphapolyomavirus Alphapolyomavirus quintihominis
19436635 19436635 PRJNA1160211_S_NODE_64236_length_536_cov_4.989201_g63040_i0 PRJNA1160211 64236 536 4.989201 26.74211736 Alphapolyomavirus quintihominis 1891726 Viruses Viruses 985 0   NTclustered gi|1606663519|dbj|LC148294.1| 493803 g63040 i0 99.813 90.8824626865672 536 1 100 0 1 536 4854 4319 Merkel cell polyomavirus genes for large T antigen, VP1, VP2, complete cds, strain: JPN-TM-MCC2 blastn 48713 985 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Alphapolyomavirus Alphapolyomavirus quintihominis
20711520 20711520 PRJNA1160211_S_NODE_258817_length_255_cov_1.098901_g257584_i0 PRJNA1160211 258817 255 1.098901 2.80219755 Betapolyomavirus macacae 1891767 Viruses Viruses 451 1.95e-122   NTclustered gi|13345942|gb|AF332562.1| 1891767 g257584 i0 99.595 112.360784313725 247 1 97 0 1 247 4478 4232 Simian virus 40 strain 777, complete genome blastn 28652 451 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Sepolyvirales Polyomaviridae Betapolyomavirus Betapolyomavirus macacae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;