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contig_metadata

12 rows where bioproject = "PRJNA1160211", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

  • Metazoa · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA1160211 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4136259 4136259 PRJNA1160211_S_NODE_163664_length_356_cov_1.360424_g162431_i0 PRJNA1160211 163664 356 1.360424 4.84310944 Strongyloides ratti 34506 Nematoda Nematoda 104 9.17e-18   NTclustered gi|1376146209|ref|XM_024653666.1| 34506 g162431 i0 84.615 1.28370786516854 104 16 29 0 242 345 1241 1138 Strongyloides ratti AP-47 (SRAE_2000258100), partial mRNA blastn 457 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
5412726 5412726 PRJNA1160211_S_NODE_203265_length_307_cov_2.380342_g202032_i0 PRJNA1160211 203265 307 2.380342 7.30764994 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 125 4.55e-32   NR KRY41729.1 6334 g202032 i0 72.2 5.30618892508143 79 22 77.2 0 238 2 226 304 KRY41729.1 60S ribosomal protein L27a [Trichinella spiralis] diamond 1629 125 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
10514615 10514615 PRJNA1160211_S_NODE_99309_length_458_cov_33.618182_g98084_i0 PRJNA1160211 99309 458 33.618182 153.97127356 Caenorhabditis briggsae 6238 Nematoda Nematoda 327 6.590000000000001e-85   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g98084 i0 86.039 67.9978165938865 308 39 67 4 5 310 1002 1307 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 31143 327 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
13063129 13063129 PRJNA1160211_S_NODE_177331_length_338_cov_1.501887_g176098_i0 PRJNA1160211 177331 338 1.501887 5.07637806 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 292 1.73e-74   NTclustered gi|2437461975|gb|ON496984.1| 6326 g176098 i0 82.799 49.707100591716 343 43 100 14 1 338 6891 7222 Bursaphelenchus xylophilus isolate F0426-5 28S large subunit ribosomal RNA gene, partial sequence; and 28S-18S ribosomal RNA intergenic spacer, 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 16801 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
13792131 13792131 PRJNA1160211_S_NODE_299331_length_205_cov_8.303030_g298098_i0 PRJNA1160211 299331 205 8.30303 17.0212115 Metazoa 33208 Nematoda Nematoda 337 4.41e-88   NTclustered gi|1174020828|gb|KY887583.1| 6293 g298098 i0 100 88.790243902439 182 0 89 0 1 182 1765 1584 Wuchereria bancrofti isolate AP10 small subunit ribosomal RNA gene, partial sequence blastn 18202 339 0.994100294985251 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
15612569 15612569 PRJNA1160211_S_NODE_211893_length_298_cov_1.124444_g210660_i0 PRJNA1160211 211893 298 1.124444 3.35084312 Strongyloides ratti 34506 Nematoda Nematoda 54.7 0.008   NTclustered gi|1376135301|ref|XM_024647662.1| 34506 g210660 i0 100 0.191275167785235 29 0 10 0 177 205 2051 2079 Strongyloides ratti Proteinase inhibitor I2, Kunitz metazoa domain-containing protein (SRAE_1000078600), partial mRNA blastn 57 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
16341174 16341174 PRJNA1160211_S_NODE_259313_length_254_cov_3.110497_g258080_i0 PRJNA1160211 259313 254 3.110497 7.90066238 Halicephalobus 114867 Nematoda Nematoda 368 2.02e-97   NTclustered gi|564659230|gb|KF765478.1| 114868 g258080 i0 92.692 91.6889763779528 260 11 100 6 1 254 70 327 Halicephalobus gingivalis isolate Indigo S1342-13 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 23289 368 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Halicephalobus Halicephalobus gingivalis
21986020 21986020 PRJNA1160211_S_NODE_146738_length_379_cov_5.921569_g145505_i0 PRJNA1160211 146738 379 5.921569 22.44274651 Caenorhabditis remanei 31234 Nematoda Nematoda 134 1.25e-26   NTclustered gi|2445350017|ref|XM_003114867.2| 31234 g145505 i0 80.108 5.39841688654354 186 32 48 4 106 288 1014 1197 Caenorhabditis remanei uncharacterized protein (GCK72_001731), partial mRNA blastn 2046 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
23262557 23262557 PRJNA1160211_S_NODE_297419_length_213_cov_4.757143_g296186_i0 PRJNA1160211 297419 213 4.757143 10.13271459 Rhomborhabditis regina 2528157 Nematoda Nematoda 167 6.419999999999999e-37   NTclustered gi|157787505|gb|EF990726.1| 2528157 g296186 i0 85.03 78.6948356807512 167 22 78 3 16 181 1063 899 Rhabditoides regina strain DF5012 28S large subunit ribosomal RNA gene, partial sequence blastn 16762 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhomborhabditis Rhomborhabditis regina
29522820 29522820 PRJNA1160211_S_NODE_212330_length_297_cov_3.781250_g211097_i0 PRJNA1160211 212330 297 3.78125 11.2303125 Trichuris 36086 Nematoda Nematoda 65.9 4.08e-10   NR CDW54430.1 36087 g211097 i0 61.2 2.29292929292929 49 19 49.5 0 297 151 125 173 CDW54430.1 mitochondrial uncoupling protein 4 [Trichuris trichiura] diamond 681 65.9 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
29914223 29914223 PRJNA1160211_S_NODE_128591_length_407_cov_4.497006_g127359_i0 PRJNA1160211 128591 407 4.497006 18.30281442 Oesophagostomum dentatum 61180 Nematoda Nematoda 47 0.00601   NR KHJ89269.1 61180 g127359 i0 63.9 0.265356265356265 36 11 25.1 2 274 173 218 253 KHJ89269.1 hypothetical protein OESDEN_10911 [Oesophagostomum dentatum] diamond 108 47 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Oesophagostomum Oesophagostomum dentatum
32821638 32821638 PRJNA1160211_S_NODE_271060_length_247_cov_1.327586_g269827_i0 PRJNA1160211 271060 247 1.327586 3.27913742 Diploscapter pachys 2018661 Nematoda Nematoda 45.8 0.00325   NR PAV80121.1 2018661 g269827 i0 34.2 0.88663967611336 73 48 88.7 0 28 246 615 687 PAV80121.1 hypothetical protein WR25_24733 [Diploscapter pachys] diamond 219 45.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;