RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1160211", tax_kingdom = "Fungi" and tax_phylum = "Blastocladiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Blastocladiomycota · 3 ✖

tax_kingdom 1

  • Fungi · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1160211 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5412462 5412462 PRJNA1160211_S_NODE_166805_length_351_cov_11.053957_g165572_i0 PRJNA1160211 166805 351 11.053957 38.79938907 Physoderma maydis 276838 Fungi Fungi 268 3.03e-67   NTclustered gi|311235628|ref|NG_027645.1| 276838 g165572 i0 82.951 52.4387464387464 305 45 87 6 23 326 1398 1696 Physoderma maydis DUKE DUH0007932 28S rRNA gene, partial sequence; from reference material blastn 18406 268 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Physodermatomycetes Physodermatales Physodermataceae Physoderma Physoderma maydis
7962461 7962461 PRJNA1160211_S_NODE_14307_length_758_cov_8.686131_g13418_i0 PRJNA1160211 14307 758 8.686131 65.84087298 Catenaria anguillulae PL171 765915 Fungi Fungi 67.8 4.89e-10   NR ORZ39865.1 765915 g13418 i0 44.2 0.304749340369393 77 41 30.5 1 309 79 85 159 ORZ39865.1 ubiquitin-related domain-containing protein [Catenaria anguillulae PL171] diamond 231 67.8 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Catenariaceae Catenaria Catenaria anguillulae
18161347 18161347 PRJNA1160211_S_NODE_205135_length_305_cov_1.961207_g203902_i0 PRJNA1160211 205135 305 1.961207 5.98168135 Blastocladiales 4805 Fungi Fungi 120 2.88e-29   NR KAI9218883.1 64508 g203902 i0 57.1 4.87868852459016 98 42 96.4 0 2 295 589 686 KAI9218883.1 P-type cation-transporting ATPase [Blastocladiella britannica] diamond 1488 120 1 Eukaryota Opisthokonta Fungi Blastocladiomycota Blastocladiomycetes Blastocladiales Blastocladiaceae Blastocladiella Blastocladiella britannica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;