RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1160211" and tax_clade = "sulfur-oxidizing symbionts"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA1160211 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23261416 23261416 PRJNA1160211_S_NODE_140399_length_389_cov_1.424051_g139166_i0 PRJNA1160211 140399 389 1.424051 5.53955839 endosymbiont of Ridgeia piscesae 54398 Bacteria Bacteria 152 3.56e-32   NTclustered gi|410699271|gb|JX570600.1| 54398 g139166 i0 78.723 53.3110539845758 235 44 60 6 25 256 899 668 Endosymbiont of Ridgeia piscesae clone LF8CM2b5 16S ribosomal RNA gene, partial sequence blastn 20738 152 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       endosymbiont of Ridgeia piscesae
30691573 30691573 PRJNA1160211_S_NODE_269573_length_248_cov_0.880000_g268340_i0 PRJNA1160211 269573 248 0.88 2.1824 Candidatus Thiodiazotropha 1913444 Bacteria Bacteria 114 2.6e-27   NR WP_202775563.1 235205 g268340 i0 63.4 4.95967741935484 82 30 99.2 0 3 248 562 643 WP_202775563.1 reverse transcriptase domain-containing protein, partial [Bathymodiolus azoricus thioautotrophic gill symbiont] diamond 1230 114 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Bathymodiolus azoricus thioautotrophic gill symbiont

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;