RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1160211", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1160211 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2860639 2860639 PRJNA1160211_S_NODE_207603_length_302_cov_3.698690_g206370_i0 PRJNA1160211 207603 302 3.69869 11.1700438 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.028   NTclustered gi|916510674|ref|XM_013500111.1| 44415 g206370 i0 100 0.0927152317880795 28 0 9 0 15 42 1180 1153 Eimeria mitis uncharacterized protein (EMH_0079190), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
6688083 6688083 PRJNA1160211_S_NODE_26506_length_670_cov_4.274707_g25427_i0 PRJNA1160211 26506 670 4.274707 28.6405369 Eucoccidiorida 75739 SAR_Eukaryotes SAR_Eukaryotes 266 3.43e-85   NR EPR63516.1 507601 g25427 i0 58.3 3.97164179104478 223 79 99.4 5 668 3 112 321 EPR63516.1 putative glyoxalase I [Toxoplasma gondii GT1] diamond 2661 266 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
7416390 7416390 PRJNA1160211_S_NODE_207126_length_303_cov_1.339130_g205893_i0 PRJNA1160211 207126 303 1.33913 4.0575639 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 60.2 1.69e-4   NTclustered gi|2785767008|ref|XM_067218659.1| 5824 g205893 i0 100 2.99339933993399 32 0 11 0 202 233 1692 1661 Plasmodium brasilianum uncharacterized protein (MKS88_005402), partial mRNA blastn 907 60.2 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
13791615 13791615 PRJNA1160211_S_NODE_160631_length_360_cov_2.066202_g159398_i0 PRJNA1160211 160631 360 2.066202 7.4383272 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.034   NTclustered gi|1620165769|ref|XM_028680746.1| 880535 g159398 i0 96.875 0.166666666666667 32 0 9 1 96 127 3496 3466 Plasmodium sp. gorilla clade G2 conserved Plasmodium protein, unknown function (PADL01_0602600), partial mRNA blastn 60 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
13792132 13792132 PRJNA1160211_S_NODE_299351_length_205_cov_7.090909_g298118_i0 PRJNA1160211 299351 205 7.090909 14.53636345 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 344 2.64e-90   NTclustered gi|2866450392|gb|PQ722881.1| 35084 g298118 i0 97.073 99.9804878048781 205 4 99 1 3 205 301 505 Babesia sp. isolate YN-4 WX-T-165 small subunit ribosomal RNA gene, partial sequence blastn 20496 344 1 Eukaryota Sar   Apicomplexa Aconoidasida Piroplasmida Babesiidae Babesia Babesia sp.
24536302 24536302 PRJNA1160211_S_NODE_29940_length_652_cov_7.661485_g28846_i0 PRJNA1160211 29940 652 7.661485 49.9528822 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.018   NTclustered gi|820690829|tpe|LN714482.1| 572307 g28846 i0 100 0.044478527607362 29 0 4 0 451 479 4344310 4344282 TPA_asm: Neospora caninum Liverpool, chromosome chrVIIb, complete genome blastn 29 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;