RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA1160211", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1160211 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7962777 7962777 PRJNA1160211_S_NODE_181607_length_332_cov_4.776062_g180374_i0 PRJNA1160211 181607 332 4.776062 15.85652584 Lentisphaeria bacterium 2053569 Bacteria Bacteria 429 1.2399999999999996e-115   NTclustered gi|2189495548|gb|CP091727.1| 2053569 g180374 i0 91.429 135.418674698795 315 24 95 3 11 324 950911 950599 MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome blastn 44959 429 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
9237802 9237802 PRJNA1160211_S_NODE_221148_length_288_cov_3.665116_g219915_i0 PRJNA1160211 221148 288 3.665116 10.55553408 Lentisphaeria bacterium 2053569 Bacteria Bacteria 344 3.929999999999999e-90   NTclustered gi|2189495548|gb|CP091727.1| 2053569 g219915 i0 90.299 73.0381944444444 268 19 92 7 2 266 949177 949440 MAG: Lentisphaeria bacterium isolate nC33_lr_bin.207.fa chromosome blastn 21035 344 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;