RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1160211", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1160211 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28556526 28556526 PRJNA1160211_S_NODE_87147_length_483_cov_4.468293_g85925_i0 PRJNA1160211 87147 483 4.468293 21.58185519 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 208 5.67e-59   NR MEI6438408.1 2035772 g85925 i0 63.9 2.94409937888199 158 57 98.1 0 2 475 575 732 MEI6438408.1 efflux RND transporter permease subunit [Candidatus Omnitrophota bacterium] diamond 1422 208 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28619685 28619685 PRJNA1160211_S_NODE_32247_length_641_cov_10.845070_g31139_i0 PRJNA1160211 32247 641 10.84507 69.5168987 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 149 5.36e-41   NR MBP9865486.1 2035772 g31139 i0 55.9 1.0390015600624 111 49 52 0 347 15 1 111 MBP9865486.1 thiopurine S-methyltransferase [Candidatus Omnitrophota bacterium] diamond 666 149 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
31671509 31671509 PRJNA1160211_S_NODE_64997_length_534_cov_5.685466_g63799_i0 PRJNA1160211 64997 534 5.685466 30.36038844 Pseudomonadati 3379134 Bacteria Bacteria 95.5 9.24e-20   NR MBU2496100.1 2035772 g63799 i0 82.1 6.02808988764045 56 10 31.5 0 312 479 2 57 MBU2496100.1 GDP-mannose 4,6-dehydratase [Candidatus Omnitrophota bacterium] diamond 3219 95.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32632468 32632468 PRJNA1160211_S_NODE_103980_length_449_cov_42.694149_g102754_i0 PRJNA1160211 103980 449 42.694149 191.69672901 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 119 1.72e-28   NR MCB9772223.1 2035772 g102754 i0 55.2 0.701559020044543 105 41 66.1 1 404 108 8 112 MCB9772223.1 TolC family protein [Candidatus Omnitrophota bacterium] diamond 315 119 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;