RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1160211", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 4 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA1160211 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3589145 3589145 PRJNA1160211_S_NODE_254883_length_258_cov_1.243243_g253650_i0 PRJNA1160211 254883 258 1.243243 3.20756694 root 1 Root_unresolved Root_unresolved 80.5 1.08e-10   NTclustered gi|2874253795|emb|OY969779.1| 176233 g253650 i0 92.982 34.1627906976744 57 0 22 3 179 235 158776 158828 MAG: uncultured Methanobacteriaceae archaeon isolate MFD04716.bin.c.1 genome assembly, chromosome: 1 blastn 8814 80.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
7416341 7416341 PRJNA1160211_S_NODE_191566_length_320_cov_8.603239_g190333_i0 PRJNA1160211 191566 320 8.603239 27.5303648 Methanococcus 2184 Archaea Archaea 121 8.11e-23   NTclustered gi|2891706660|gb|CP178162.1| 39152 g190333 i0 98.529 33.45625 68 1 21 0 234 301 796799 796866 Methanococcus maripaludis strain LL chromosome, complete genome blastn 10706 121 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanococcaceae Methanococcus Methanococcus maripaludis
9966706 9966706 PRJNA1160211_S_NODE_240888_length_269_cov_18.295918_g239655_i0 PRJNA1160211 240888 269 18.295918 49.21601942 Methanocaldococcaceae 196117 Archaea Archaea 82.4 3.14e-11   NTclustered gi|2891700162|gb|CP178165.1| 213231 g239655 i0 97.872 28.5130111524164 47 1 17 0 22 68 710545 710499 Methanocaldococcus indicus strain SL43 chromosome, complete genome blastn 7670 82.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus indicus
22715204 22715204 PRJNA1160211_S_NODE_150558_length_374_cov_2.059801_g149325_i0 PRJNA1160211 150558 374 2.059801 7.70365574 Methanobacteriaceae 2159 Archaea Archaea 102 3.48e-17   NTclustered gi|333824386|gb|CP002772.1| 868131 g149325 i0 91.892 39.8689839572192 74 5 20 1 302 374 814199 814126 Methanobacterium paludis strain SWAN1, complete genome blastn 14911 102 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium paludis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;