RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1160211", tax_clade = "Metamonada" and tax_phylum = "Preaxostyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Preaxostyla · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA1160211 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2860172 2860172 PRJNA1160211_S_NODE_147983_length_377_cov_18.223684_g146750_i0 PRJNA1160211 147983 377 18.223684 68.70328868 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 52.8 0.036   NTclustered gi|2794969073|ref|XM_067872788.1| 2049356 g146750 i0 100 0.148541114058355 28 0 7 0 95 122 1742 1715 Monocercomonoides exilis putative serine/threonine-protein phosphatase 2A regulatory subunit A (MONOS_2834), partial mRNA blastn 56 52.8 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
18161929 18161929 PRJNA1160211_S_NODE_290195_length_231_cov_4.348101_g288962_i0 PRJNA1160211 290195 231 4.348101 10.04411331 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 52.8 0.021   NTclustered gi|2794956356|ref|XM_067863009.1| 2049356 g288962 i0 96.875 0.138528138528139 32 0 14 1 39 70 2844 2814 Monocercomonoides exilis uncharacterized protein (MONOS_10550), mRNA blastn 32 52.8 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis
19436694 19436694 PRJNA1160211_S_NODE_71476_length_518_cov_3.388764_g70268_i0 PRJNA1160211 71476 518 3.388764 17.55379752 Monocercomonoides exilis 2049356 Preaxostyla other_Eukaryota 58.4 0.001   NTclustered gi|2794964707|ref|XM_067866471.1| 2049356 g70268 i0 97.059 0.0656370656370656 34 1 7 0 117 150 7806 7773 Monocercomonoides exilis putative signal recognition particle-docking protein FtsY (MONOS_13740), mRNA blastn 34 58.4 1 Eukaryota Metamonada   Preaxostyla   Oxymonadida Polymastigidae Monocercomonoides Monocercomonoides exilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;