RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1159911", tax_phylum = "Peploviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Peploviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1159911 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6140744 6140744 PRJNA1159911_P_NODE_104985_length_198_cov_6.232000_g104443_i0 PRJNA1159911 104985 198 6.232 12.33936 Lymphocryptovirus 10375 Viruses Viruses 366 5.4e-97   NTclustered gi|1519305892|dbj|AP019128.1| 10376 g104443 i0 100 796.722222222222 198 0 100 0 1 198 38611 38414 Human gammaherpesvirus 4 UPN326_PBMC DNA, nearly complete genome blastn 157751 366 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
10510879 10510879 PRJNA1159911_P_NODE_103329_length_231_cov_2.829114_g102787_i0 PRJNA1159911 103329 231 2.829114 6.53525334 Lymphocryptovirus humangamma4 3050299 Viruses Viruses 71.3 5.7e-8   NTclustered gi|1465382783|emb|LS992247.1| 10376 g102787 i0 97.561 19.0562770562771 41 1 18 0 2 42 88199 88239 Human gammaherpesvirus 4 isolate Human herpesvirus 4 genome assembly, chromosome: I blastn 4402 71.3 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4
17615656 17615656 PRJNA1159911_P_NODE_40634_length_398_cov_1.956923_g40092_i0 PRJNA1159911 40634 398 1.956923 7.78855354 root 1 Root_unresolved Root_unresolved 736 0   NTclustered gi|747017440|dbj|AB850654.1| 10376 g40092 i0 100 236.56783919598 398 0 100 0 1 398 167952 168349 Human herpesvirus 4 DNA, complete genome, strain: HN15 blastn 94154 736 1 Viruses   Heunggongvirae Peploviricota Herviviricetes Herpesvirales Orthoherpesviridae Lymphocryptovirus Lymphocryptovirus humangamma4

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;