RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA1159911" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1159911 · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5411767 5411767 PRJNA1159911_P_NODE_88425_length_250_cov_0.870056_g87883_i0 PRJNA1159911 88425 250 0.870056 2.17514 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 126 7.52e-33   NR MBK9039439.1 2053517 g87883 i0 79.3 0.984 82 17 98.4 0 248 3 176 257 MBK9039439.1 VWA domain-containing protein [Bdellovibrionales bacterium] diamond 246 126 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
6140822 6140822 PRJNA1159911_P_NODE_5205_length_1540_cov_2.807089_g4943_i0 PRJNA1159911 5205 1540 2.807089 43.2291706 Bacteriovorax 146784 Bacteria Bacteria 2224 0   NTclustered gi|1700689994|gb|CP030035.1| 960 g4943 i0 92.751 233.36038961039 1545 102 100 10 1 1540 1660369 1661908 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 359375 2224 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
13791314 13791314 PRJNA1159911_P_NODE_76571_length_269_cov_2.183673_g76029_i0 PRJNA1159911 76571 269 2.183673 5.87408037 Bacteriovorax 146784 Bacteria Bacteria 381 2.7699999999999995e-101   NTclustered gi|1700689994|gb|CP030035.1| 960 g76029 i0 92.193 385.219330855019 269 21 100 0 1 269 1661901 1662169 Bacteriovorax stolpii strain AC01 chromosome, complete genome blastn 103624 381 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
19433307 19433307 PRJNA1159911_P_NODE_17476_length_717_cov_3.169255_g16974_i0 PRJNA1159911 17476 717 3.169255 22.72355835 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 157 2.82e-44   NR MBX9767865.1 2053517 g16974 i0 53.8 0.543933054393305 130 60 54.4 0 717 328 72 201 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 390 157 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28461812 28461812 PRJNA1159911_P_NODE_58826_length_314_cov_2.070539_g58284_i0 PRJNA1159911 58826 314 2.070539 6.50149246 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 123 8.63e-33   NR MBX9767865.1 2053517 g58284 i0 96.5 0.544585987261146 57 2 54.5 0 87 257 145 201 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 171 123 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30577251 30577251 PRJNA1159911_P_NODE_44433_length_374_cov_2.704319_g43891_i0 PRJNA1159911 44433 374 2.704319 10.11415306 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 213 4.29e-68   NR MBX9767865.1 2053517 g43891 i0 86.7 0.962566844919786 120 16 96.3 0 13 372 1 120 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 360 213 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32632457 32632457 PRJNA1159911_P_NODE_77840_length_267_cov_1.216495_g77298_i0 PRJNA1159911 77840 267 1.216495 3.24804165 Bdellovibrio sp. 28201 Bacteria Bacteria 51.2 4.35e-5   NR MFM6928553.1 28201 g77298 i0 34.1 0.98876404494382 88 48 98.9 2 3 266 108 185 MFM6928553.1 MBL fold metallo-hydrolase [Bdellovibrio sp.] diamond 264 51.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;